SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22129

Length: 502 nt

UniGene Fasta

>sp_v3.0_unigene22129
ATGACAAGCACAGATTCGTGCTGCGTCTGCTTCAATGCAGTAGTTTTCTATCCGACGACAATGTTATTTCATTTGGTTGGGCGCACTATACTCTGTTTTGGGTAGAAATTTGCCTCTGGCCTTGCTTTTCATCTTACATCTCTGGTCCTATGCTGATCTAGTTGTGGAAGTTCTTTTATACAAAGGAAATGGGGTGCATTACAAGTATTTTAAATTTCTTTATGCCACAGAGCAAACCCTCAAATCTAGAACTTAAGATGGTTGAGGCTCTGAAGAAGAGAGCAATCTCTGGAAATTGCACCGTGAAAACATTCAACAGTGTTATCATGAAGTTCCCTAAAATTGATGAAAGCTTCGAAAAAGTTAGAGTTGTGTTTAAGAAATACGATAAAGATTCCAGTGGAAAAATAGATTTGGATGAATTGAAGAGCTGTTTTCAGGAGTTGAATGTTTCTTTGACATATGAACAATAAAAGAATTATATCATGAGTGTGATATGGAT

Ace file of the UniGene sp_v3.0_unigene22129

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-binding EF hand-like protein n=2 Tax=Oryza sativa RepID=Q6H739_ORYSJ	-	-	3.0e-18	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Calcium ion binding protein	-	-	3.695e-08	-

Source	Gene names
Sma3	Os02g0198200; OsI_06250; P0026H03.15;

Source	GOs	Term	Type	e value	Identity
Sma3	calcium ion binding	GO:0005509	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002300587.1	predicted protein [Populus trichocarpa]	1.0e-19	45%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNG7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 119 aas, your sequence is shorter than subject: 95 - 224

Fln protein: MGCITSILNFFMPQSKPSNLELKMVEALKKRAISGNCTVKTFNSVIMKFPKIDESFEKVRVVFKKYDKDSSGKIDLDELKSCFQELNVSLTYEQ*

Protein Length: 96

Fln nts: ATGACAAGCACAGATTCGTGCTGCGTCTGCTTCAATGCAGTAGTTTTCTATCCGACGACAATGTTATTTCATTTGGTTGGGCGCACTATACTCTGTTTTGGGTAGAAATTTGCCTCTGGCCTTGCTTTTCATCTTACATCTCTGGTCCTATGCTGATCTAGTTGTGGAAGTTCTTTTATACAAAGGAA_-_ATGGGGTGCATTACAAGTATTTTAAATTTCTTTATGCCACAGAGCAAACCCTCAAATCTAGAACTTAAGATGGTTGAGGCTCTGAAGAAGAGAGCAATCTCTGGAAATTGCACCGTGAAAACATTCAACAGTGTTATCATGAAGTTCCCTAAAATTGATGAAAGCTTCGAAAAAGTTAGAGTTGTGTTTAAGAAATACGATAAAGATTCCAGTGGAAAAATAGATTTGGATGAATTGAAGAGCTGTTTTCAGGAGTTGAATGTTTCTTTGACATATGAACAATAAAAGAATTATATCATGAGTGTGATATGGAT

Fln Alignment:

Contig22129___MGCITSILNFFMPQSKPSNLELKMVEALKKRAISGNCTVKTFNSVIMKFPKIDESFEKVRVVFKKYDKDSSGKIDLDELKSCFQELNVSLTYEQ
A9NNG7_______________MGGKTSKFQIFWRTTAPSKLELKMVEAMRKKATSGGSTLKSFNSIIMKFPKIDESFENVRDVFQKFDKDSSGTIDLEELKECFRELQVSFTDEE

SNPs (tot: 3)

Position	A %	C %	T %	Probability
93		88	11	0.923564
126		11	88	0.923564
150	80	20		0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain