SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22097

Length: 2400 nt

UniGene Fasta

>sp_v3.0_unigene22097
TTTATTATTTATTTTTTCAGGGGAAGCGCATTCCACTAAAGAGATTAGAAGGGCTCTATGCTGTTTTATCCACTTTCTTCGCTGTGTTTTAACGGAAGCGAATCCTACTGAAGACGAATGATCGACCAACGGTGAATCAATTTACAGAGAAGACAAGTCTAGGGTTTGATTTCGTTTAGAGTGTCCCCATAATGGATCCTTCCTCGCCTCCGCTGAACTATATAGTTCGAGGCCCGGAAGGGTTGTCATTATTGGTCGGTCCGCCTTTTCAAGATGAGAACCCAGTCGTAAAACTTGATAAGGCGTCATGTGCGTCTGCAAAGTTCAGCGATGATGGACGGAACCTTTTGATGATCACAGTGAATAATGTGGACATTTATGACTGTGACGGAGCTACTAAAATCCAAACAATTGATGTTCCTGGTGTCATCGCTGCAGTTTTTTCTCCACGAGGTCGATTTTTGCAGACCTATCGGCGGTCATCTGGTGGCCAAGACAAGAATTTAGTACTATGGGATGTTCAATCTGGAGTTGCTGCGCATCAATTATCGCAGAAAAATATATCTAAAACCAATTGGCCTTCATTCCAATTCAGTGAAGATGAGGCAGTTGCTTGTCGAATGGCAACCAATGAGATTCATGTTTTTGATCCGCAAAACTTTGCTAAAGGAATTGTAAATAAGATCCGCCTTCCTGGAATAGCTGGTTTGCAACTTGCTACAGCTCCTCCAACATATTTTGCGGCATATATTCCCGAATCAAAGGGAATACCAGCCAGCATTCAGATATTTAAGCGAGAGGATGTTGGCCAGGCCCAGCCTGTAGCTCGACGGAGCTTTTTTCAGTGTTCCAATGTCCAGTTAATTTGGAACCATGGATCGACTGGATTGTTGGTTATTGCACAGTCTGATGTTGACAAAAGCAATCAAAGTTACTATGGGGAGTCCAGATTACATTACTTGACGACTGATGGGAGTCACGAAGGGCTTGTGCCTCTCCGTAAGGAGGGACCTGTCCATGATGTTAAGTGGTCTCCTTCAGGAACTGAATTTGCAGTGGTTTACGGATTCATGCCTGCAAGAGCAACGTTGTTCGACAAAAAGTGCAATCCTCTGTTTGAGTTTGGAACAGGGCCTTACAATACACTCAGATGGAACCCTCATGGAAAACTTTTATGCATAGCAGGTTTTGGTAATTTACCTGGCGAAATGGCATTTTGGGATTGTTCTGCTAAAAAGTTGCTTGGAAGTTCAAAGGCTGAATGGTCAGTCACAAGTGAATGGTCGCCTGATGGACGATATTTTATGACAGCAACAACAGCTCCTCGGTTGCAAGTGGACAATGGGATCAAGATATTTTCTTATAATGGATCACTATACTTCAAGAAGATGTTTGACAAACTATATCAGGCAGAGTGGCGCCCAGCAGAGTCCACTATATATGGAGATCTTCCAGAGTTAGTAGAGCAAGTAAAGGAAAATCTGCGGATTGAGACAGCTAATGGGACAACTAATGCAGCCTCCAAAACCTCAAATCAAGTTCCAAAGATTGCTGTCGCTGCACCAAAACCTGCAGCATATCAACCACCCCATGCTAAAACTGCCTCTGCACCAAAGCCTGCATCATATCAGCCACCACATGCTAAAAGCGCTATGGCTGTTAATGCTCAGATTTTTGGCGAGACAAATTCTTCCCAAGAGACAAATAAGAATGCACTTAAAAACAAGAAGAAAAGGGAGAAACAGAGGGAGAAAAAGGCACAAGAAGCAGCTTCAGTGAATAGTAGTTGATTTTTTCTGTTTTGAGTTCGAGCTCAAATGACATAACAGCACCCATGGGTTCATCTGTATGCTGCAGTAGCTCCTGGGCGTTTTAAAATTTGAAGTATTTTTCGGTTTGGTATTTCAGATTATTCAGACCGTTGGGATTGTCAAATTTTGTTGCCGTTTTTAAGTTACTTGCGTGGATGGTCTGTCACTGCAGAATTGTGTTGAATGCATGATTGAGGAGTTAAAAGGGCAATTAAATCAATGCATCGTGAATTGGCATGCTATCAATGCAGATCGATATACTAGCCTTTCTATAAGATTTTTTTGTCGATGCTGAAGGGTTTTTTTACTGTTTTGAGTAGAGGACGTGATCCTTATTAGCAAGAGTTTCACCCAATTTTGATGAAAATAATGAATTTTTCCTTTTGAGCGTCAGGTGTGATAACCAGCCAAGGCAGTGGGTTCTTTATGGAAAACTAAGGGTGTTAATGTAGAAGTTTCGGTTGGAGTTGTAGTCCTATTATAGCAACATTATTTCTGTTCTTTCAAATGACAGCATCACCGGCTCCCCACAACCTTTGGAACATTTTATGGAGAGACATGCAACCCTTATATATATATATATGATATC

Ace file of the UniGene sp_v3.0_unigene22097

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	eukaryotic translation initiation factor eIF2A-like protein [Arabidopsis thaliana] gb\|AAG52134.1\|AC010556_16 unknown protein; 49372-46275 [Arabidopsis thaliana] gb\|AAL07151.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14246.1\| unknown protein [Arabidop	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor 2A, beta propellor-like domain	IPR013979	-	0.0	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein chr1:27518335-27521432 FORWARD LENGTH=513	54%
RefSeq	Arabidopsis thaliana	NP_565058.1	eukaryotic translation initiation factor eIF2A-like protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002330655.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNN9

Fln msg:

Fln protein: MDPSSPPLNYIVRGPEGLSLLVGPPFQDENPVVKLDKASCASAKFSDDGRNLLMITVNNVDIYDCDGATKIQTIDVPGVIAAVFSPRGRFLQTYRRSSGGQDKNLVLWDVQSGVAAHQLSQKNISKTNWPSFQFSEDEAVACRMATNEIHVFDPQNFAKGIVNKIRLPGIAGLQLATAPPTYFAAYIPESKGIPASIQIFKREDVGQAQPVARRSFFQCSNVQLIWNHGSTGLLVIAQSDVDKSNQSYYGESRLHYLTTDGSHEGLVPLRKEGPVHDVKWSPSGTEFAVVYGFMPARATLFDKKCNPLFEFGTGPYNTLRWNPHGKLLCIAGFGNLPGEMAFWDCSAKKLLGSSKAEWSVTSEWSPDGRYFMTATTAPRLQVDNGIKIFSYNGSLYFKKMFDKLYQAEWRPAESTIYGDLPELVEQVKENLRIETANGTTNAASKTSNQVPKIAVAAPKPAAYQPPHAKTASAPKPASYQPPHAKSAMAVNAQIFGETNSSQETNKNALKNKKKREKQREKKAQEAASVNSS*

Protein Length: 534

Fln nts: TTTATTATTTATTTTTTCAGGGGAAGCGCATTCCACTAAAGAGATTAGAAGGGCTCTATGCTGTTTTATCCACTTTCTTCGCTGTGTTTTAACGGAAGCGAATCCTACTGAAGACGAATGATCGACCAACGGTGAATCAATTTACAGAGAAGACAAGTCTAGGGTTTGATTTCGTTTAGAGTGTCCCCATA_-_ATGGATCCTTCCTCGCCTCCGCTGAACTATATAGTTCGAGGCCCGGAAGGGTTGTCATTATTGGTCGGTCCGCCTTTTCAAGATGAGAACCCAGTCGTAAAACTTGATAAGGCGTCATGTGCGTCTGCAAAGTTCAGCGATGATGGACGGAACCTTTTGATGATCACAGTGAATAATGTGGACATTTATGACTGTGACGGAGCTACTAAAATCCAAACAATTGATGTTCCTGGTGTCATCGCTGCAGTTTTTTCTCCACGAGGTCGATTTTTGCAGACCTATCGGCGGTCATCTGGTGGCCAAGACAAGAATTTAGTACTATGGGATGTTCAATCTGGAGTTGCTGCGCATCAATTATCGCAGAAAAATATATCTAAAACCAATTGGCCTTCATTCCAATTCAGTGAAGATGAGGCAGTTGCTTGTCGAATGGCAACCAATGAGATTCATGTTTTTGATCCGCAAAACTTTGCTAAAGGAATTGTAAATAAGATCCGCCTTCCTGGAATAGCTGGTTTGCAACTTGCTACAGCTCCTCCAACATATTTTGCGGCATATATTCCCGAATCAAAGGGAATACCAGCCAGCATTCAGATATTTAAGCGAGAGGATGTTGGCCAGGCCCAGCCTGTAGCTCGACGGAGCTTTTTTCAGTGTTCCAATGTCCAGTTAATTTGGAACCATGGATCGACTGGATTGTTGGTTATTGCACAGTCTGATGTTGACAAAAGCAATCAAAGTTACTATGGGGAGTCCAGATTACATTACTTGACGACTGATGGGAGTCACGAAGGGCTTGTGCCTCTCCGTAAGGAGGGACCTGTCCATGATGTTAAGTGGTCTCCTTCAGGAACTGAATTTGCAGTGGTTTACGGATTCATGCCTGCAAGAGCAACGTTGTTCGACAAAAAGTGCAATCCTCTGTTTGAGTTTGGAACAGGGCCTTACAATACACTCAGATGGAACCCTCATGGAAAACTTTTATGCATAGCAGGTTTTGGTAATTTACCTGGCGAAATGGCATTTTGGGATTGTTCTGCTAAAAAGTTGCTTGGAAGTTCAAAGGCTGAATGGTCAGTCACAAGTGAATGGTCGCCTGATGGACGATATTTTATGACAGCAACAACAGCTCCTCGGTTGCAAGTGGACAATGGGATCAAGATATTTTCTTATAATGGATCACTATACTTCAAGAAGATGTTTGACAAACTATATCAGGCAGAGTGGCGCCCAGCAGAGTCCACTATATATGGAGATCTTCCAGAGTTAGTAGAGCAAGTAAAGGAAAATCTGCGGATTGAGACAGCTAATGGGACAACTAATGCAGCCTCCAAAACCTCAAATCAAGTTCCAAAGATTGCTGTCGCTGCACCAAAACCTGCAGCATATCAACCACCCCATGCTAAAACTGCCTCTGCACCAAAGCCTGCATCATATCAGCCACCACATGCTAAAAGCGCTATGGCTGTTAATGCTCAGATTTTTGGCGAGACAAATTCTTCCCAAGAGACAAATAAGAATGCACTTAAAAACAAGAAGAAAAGGGAGAAACAGAGGGAGAAAAAGGCACAAGAAGCAGCTTCAGTGAATAGTAGTTGA___TTTTTTCTGTTTTGAGTTCGAGCTCAAATGACATAACAGCACCCATGGGTTCATCTGTATGCTGCAGTAGCTCCTGGGCGTTTTAAAATTTGAAGTATTTTTCGGTTTGGTATTTCAGATTATTCAGACCGTTGGGATTGTCAAATTTTGTTGCCGTTTTTAAGTTACTTGCGTGGATGGTCTGTCACTGCAGAATTGTGTTGAATGCATGATTGAGGAGTTAAAAGGGCAATTAAATCAATGCATCGTGAATTGGCATGCTATCAATGCAGATCGATATACTAGCCTTTCTATAAGATTTTTTTGTCGATGCTGAAGGGTTTTTTTACTGTTTTGAGTAGAGGACGTGATCCTTATTAGCAAGAGTTTCACCCAATTTTGATGAAAATAATGAATTTTTCCTTTTGAGCGTCAGGTGTGATAACCAGCCAAGGCAGTGGGTTCTTTATGGAAAACTAAGGGTGTTAATGTAGAAGTTTCGGTTGGAGTTGTAGTCCTATTATAGCAACATTATTTCTGTTCTTTCAAATGACAGCATCACCGGCTCCCCACAACCTTTGGAACATTTTATGGAGAGACATGCAACCCTTATATATATATATATGATATC

Fln Alignment:

Contig22097___MDPSSPPLNYIVRGPEGLSLLVGPPFQDENPVVKLDKASCASAKFSDDGRNLLMITVNNVDIYDCDGATKIQTIDVPGVIAAVFSPRGRFLQTYRRSSGGQDKNLVLWDVQSGVAAHQLSQKNISKTNWPSFQFSEDEAVACRMATNEIHVFDPQNFAKGIVNKIRLPGIAGLQLATAPPTYFAAYIPESKGIPASIQIFKREDVGQAQPVARRSFFQCSNVQLIWNHGSTGLLVIAQSDVDKSNQSYYGESRLHYLTTDGSHEGLVPLRKEGPVHDVKWSPSGTEFAVVYGFMPARATLFDKKCNPLFEFGTGPYNTLRWNPHGKLLCIAGFGNLPGEMAFWDCSAKKLLGSSKAEWSVTSEWSPDGRYFMTATTAPRLQVDNGIKIFSYNGSLYFKKMFDKLYQAEWRPAESTIYGDLPELVEQVKENLRIETANGTTNAASKTSNQVXXXXXXXXXXXXXXXXXXXTASAPKPASYQPPHAKSAMAVNAQIFGETNSSQET
B8LNN9_______________MDPSSPPLNYIVRGPEGLSLLVGPPFQDENPGVKLDKVPCTSAKFSDDGRKLLVITTNNVEIYDCDGATEIKTIDVPGIIAAVFSPRGRFLQTYRRSSGGQDKNLVLWNVQSGVAVHQLSQKNISKANWPSFQFSEDEAIVCRMATNEIHFFDTENFAKGIVNKIRLPGIAGLQLATSPPTYFAAYIPESKGIPASIQIFERENLSQVQPVARRSFFKCSSVQLIWNHGSTGLLVIAQSDVDKSNQSYYGESRLHYLTTDGSHEGPVPLRKEGPVHDVKWSPSGSEFAVVYGFMPARTTLFDKKCNSLFDFGTGPYNTLRWNPYGKLLCIAGFGNLPGEMAFWDCSAKKLLGSSKAEWSVTSEWSPDGRYFMTATTAPRLQVDNGIKIFSYNGSLYFKKMFDKLYQAEWRPAESTTYGDLPELVEQVKENLRIE----TTNAAPKTSNPLSKIAVTAPKSAAYQPPHAKSVSAPKPASYQPPHAKSATAVNAQLFGEINSSQET

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
205		83		16	0.994512
1624		66		33	0.997452
1705	66		33		0.997452
1733	66			33	0.997452
1734	66	33			0.997452
1736			66	33	0.997452
1738	66			33	0.997452
1740	66			33	0.997452
1864		50	50		1.0
1867	50		50		1.0
1868		50	50		1.0
1870			50	50	1.0
1872			50	50	1.0
1873			50	50	1.0
1875	50		50		1.0
1876	50			50	1.0
1877	50	50			1.0
1879		50		50	1.0
1881		50		50	1.0
2096	16		83		0.994512
2167	20			80	0.995493
2183		12	87		0.992554
2200		87		12	0.992554
2222	87			12	0.992554
2227	12		87		0.992554
2236	12			87	0.992554
2237		12		87	0.992554
2239		12		87	0.992554
2240			87	12	0.992554
2241	12		87		0.992554
2244	87	12			0.992554
2245	87	12			0.992554
2271	12		88		1.0
2316		64		35	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2380	2394	TA TA TA TA TA TA TA T	15

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain