SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22053

Length: 2062 nt

UniGene Fasta

>sp_v3.0_unigene22053
CCCCTATTCGGGAATAGCACAAAAGAGAAGAGCCAGGACCCTTTGTCTGTCCTTATTGGCCATAGGTTTTAGCGTCCCTTGGGCATTTGCTGCTTTACCCATCATTTTATTCTCCACACCATTCTGCGGGAAAACGCATGTAGATGGTGGAGGAAGAGGAAGAAGTGGAGGTGGATCAGTTTTGAAGATACCAGAAAAATAATATTGTACTCTTACTACAAGATCTTGTAAGGGCTTGTCAAGTGGCAACAATGTCGCGAAAAGGGTTGATGGAGCAGGACCTGACTAAGCTGGATGTTACCAAGTTGCATCCACTTTCTCCAGAGGTTATTTCTCGTCAAGCTACAATAAACATTGGTACAATTGGACACGTGGCACATGGTAAATCAACAGTGGTTAAAGCAATATCTGGGGTCCAGACAGTTCGTTTCAAGAATGAACTGGAGCGTAACATCACTATTAAACTGGGATATGCCAATGCAAAAATATATAAATGTGAAGATGAGCGCTGTCCTCGGCCAATGTGTTACAAGGCATATGGAAGTGGCAAGGAAGACAGTCCTGTGTGTGATGTTCCCGGTTTTGAGCACACTCGCATGAAGCTTTTAAGACATGTGTCATTTGTTGATTGTCCGGGTCATGATATTCTCATGGCTACTATGCTCAATGGTGCGGCTATCATGGATGGGGCGCTGCTTTTGATTGCTGGCAATGAGAGCTGTCCTCAACCTCAAACTTCAGAGCATCTGGCTGCTGTGGAAATCATGCGTCTTAAACATATAATTATTTTGCAAAACAAAATTGATCTTATCCAGGAGAGTGTAGCTATCAACCAGCATGAGGCAATTCAGAAGTTTATTCAGGGTACTATCGCTGATGGAGCACCTGTAGTACCAATATCTGCACAACTGAAATACAATATCGATGTTGTCTGCGAATACATAACAAACAAGATTCCCATTCCAGAGCGTAATTTTGTTGATCCACCCAATATGATCGTTATCAGATCTTTTGATGTAAATAAGCCTGGTGCTGAAGTTGATGACATAAAAGGAGGTGTTGCAGGTGGAAGTATACTGAAGGGTGTTTTGAAGGTGAATCAAAAAATTGAAGTTCGTCCAGGCATTGTTGTCAAGGACGAGGGTGGCAACATCAAGTGTACGCCCATCTTTTCAAGAATAATTTCACTTTATGCTGAGCAGAACGAGTTGCAGTTTGCTGTTCCTGGCGGCCTTATTGGTGTGGGTACCACAATAGATCCCATGCTGACACGTGCTGACAGGCTTGTGGGGCAAGTCCTTGGAGAAGTTGGCGAGCTACCAGATGTGTTTGTTGAACTTGAGGTTAATTTTTTCCTACTTCGTCGCCTCCTGGGTGTTAGGACAAAGGGTACAGAAAAACAGGGAAAAGTTTCAAAACTGGCTAAGGGAGAAGTTCTGATGCTTAATATTGGTTCAATGTCCACTGGAGCTCGGGTGCTTGCTGTGAAGAATGACCTGGCCAAGCTCCAACTTACTTCTCCAGTGTGCACAAGTAAAGGTGAAAAGATGGCACTTAGCAGGCGAGTAGAAAAGCATTGGCGATTGATAGGATGGGGTCAAATTCAAGCTGGAGCAATGCTGGACATACCCCCGGCATCTGAATAAGATAGTGCACACACAAAACCCAATTATACTTGAGAAAATAAAAAGGGTACTTGAGAAAAGGGACAATGTGGATAGGGAGAGAGTTATTAGGAACAATTTTTGTTAGGTCGAGAAGAAAACCTTTCAAGGTATTGTGTTCTAAAGGGAACAGCTAGCTCATATATTTATTCTGATCTTGATTTTTTTATTCAGTATTTAGCATTTGTTTTAGAATGAGCTCAGTTACAGAACCCGTATTTCCAGGTTACTGAATTTCACTACAGCTATTGCTTATGTTGTAATAGAGTCCAGACCCATTGAAGAATGACCATTGTTTTCAAATTCAGTTGTAATTGTGATTTTTGTTAAATACAAGTTTATTAATTGATTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGCGTTTATACCCC

Ace file of the UniGene sp_v3.0_unigene22053

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor eIF-2 gamma subunit [Arabidopsis thaliana] gb\|AAK29674.1\|AF353097_1 protein synthesis initiation factor eIF2 gamma [Arabidopsis thaliana] gb\|AAC16745.1\| Strong similarity to initiation factor eIF-2, gb\|U37354 from S. pombe. E	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Translation initiation factor 2, gamma subunit, C-terminal	IPR015256	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G04170.1	EIF2 GAMMA eukaryotic translation initiation factor 2 gamma subunit chr1:1097423-1099702 FORWARD LENGTH=465	88%
RefSeq	Arabidopsis thaliana	NP_171913.1	translation initiation factor eIF-2 gamma subunit [Arabidopsis thaliana]	88%
RefSeq	Populus trichocarpa	XP_002326595.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL29

Fln msg:

Fln protein: MSRKGLMEQDLTKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPVCDVPGFEHTRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAGNESCPQPQTSEHLAAVEIMRLKHIIILQNKIDLIQESVAINQHEAIQKFIQGTIADGAPVVPISAQLKYNIDVVCEYITNKIPIPERNFVDPPNMIVIRSFDVNKPGAEVDDIKGGVAGGSILKGVLKVNQKIEVRPGIVVKDEGGNIKCTPIFSRIISLYAEQNELQFAVPGGLIGVGTTIDPMLTRADRLVGQVLGEVGELPDVFVELEVNFFLLRRLLGVRTKGTEKQGKVSKLAKGEVLMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKMALSRRVEKHWRLIGWGQIQAGAMLDIPPASE*

Protein Length: 466

Fln nts: CCCCTATTCGGGAATAGCACAAAAGAGAAGAGCCAGGACCCTTTGTCTGTCCTTATTGGCCATAGGTTTTAGCGTCCCTTGGGCATTTGCTGCTTTACCCATCATTTTATTCTCCACACCATTCTGCGGGAAAACGCATGTAGATGGTGGAGGAAGAGGAAGAAGTGGAGGTGGATCAGTTTTGAAGATACCAGAAAAATAATATTGTACTCTTACTACAAGATCTTGTAAGGGCTTGTCAAGTGGCAACA_-_ATGTCGCGAAAAGGGTTGATGGAGCAGGACCTGACTAAGCTGGATGTTACCAAGTTGCATCCACTTTCTCCAGAGGTTATTTCTCGTCAAGCTACAATAAACATTGGTACAATTGGACACGTGGCACATGGTAAATCAACAGTGGTTAAAGCAATATCTGGGGTCCAGACAGTTCGTTTCAAGAATGAACTGGAGCGTAACATCACTATTAAACTGGGATATGCCAATGCAAAAATATATAAATGTGAAGATGAGCGCTGTCCTCGGCCAATGTGTTACAAGGCATATGGAAGTGGCAAGGAAGACAGTCCTGTGTGTGATGTTCCCGGTTTTGAGCACACTCGCATGAAGCTTTTAAGACATGTGTCATTTGTTGATTGTCCGGGTCATGATATTCTCATGGCTACTATGCTCAATGGTGCGGCTATCATGGATGGGGCGCTGCTTTTGATTGCTGGCAATGAGAGCTGTCCTCAACCTCAAACTTCAGAGCATCTGGCTGCTGTGGAAATCATGCGTCTTAAACATATAATTATTTTGCAAAACAAAATTGATCTTATCCAGGAGAGTGTAGCTATCAACCAGCATGAGGCAATTCAGAAGTTTATTCAGGGTACTATCGCTGATGGAGCACCTGTAGTACCAATATCTGCACAACTGAAATACAATATCGATGTTGTCTGCGAATACATAACAAACAAGATTCCCATTCCAGAGCGTAATTTTGTTGATCCACCCAATATGATCGTTATCAGATCTTTTGATGTAAATAAGCCTGGTGCTGAAGTTGATGACATAAAAGGAGGTGTTGCAGGTGGAAGTATACTGAAGGGTGTTTTGAAGGTGAATCAAAAAATTGAAGTTCGTCCAGGCATTGTTGTCAAGGACGAGGGTGGCAACATCAAGTGTACGCCCATCTTTTCAAGAATAATTTCACTTTATGCTGAGCAGAACGAGTTGCAGTTTGCTGTTCCTGGCGGCCTTATTGGTGTGGGTACCACAATAGATCCCATGCTGACACGTGCTGACAGGCTTGTGGGGCAAGTCCTTGGAGAAGTTGGCGAGCTACCAGATGTGTTTGTTGAACTTGAGGTTAATTTTTTCCTACTTCGTCGCCTCCTGGGTGTTAGGACAAAGGGTACAGAAAAACAGGGAAAAGTTTCAAAACTGGCTAAGGGAGAAGTTCTGATGCTTAATATTGGTTCAATGTCCACTGGAGCTCGGGTGCTTGCTGTGAAGAATGACCTGGCCAAGCTCCAACTTACTTCTCCAGTGTGCACAAGTAAAGGTGAAAAGATGGCACTTAGCAGGCGAGTAGAAAAGCATTGGCGATTGATAGGATGGGGTCAAATTCAAGCTGGAGCAATGCTGGACATACCCCCGGCATCTGAATAA___GATAGTGCACACACAAAACCCAATTATACTTGAGAAAATAAAAAGGGTACTTGAGAAAAGGGACAATGTGGATAGGGAGAGAGTTATTAGGAACAATTTTTGTTAGGTCGAGAAGAAAACCTTTCAAGGTATTGTGTTCTAAAGGGAACAGCTAGCTCATATATTTATTCTGATCTTGATTTTTTTATTCAGTATTTAGCATTTGTTTTAGAATGAGCTCAGTTACAGAACCCGTATTTCCAGGTTACTGAATTTCACTACAGCTATTGCTTATGTTGTAATAGAGTCCAGACCCATTGAAGAATGACCATTGTTTTCAAATTCAGTTGTAATTGTGATTTTTGTTAAATACAAGTTTATTAATTGATTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGCGTTTATACCCC

Fln Alignment:

Contig22053___MSRKGLMEQDLTKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPVCDVPGFEHTRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAGNESCPQPQTSEHLAAVEIMRLKHIIILQNKIDLIQESVAINQHEAIQKFIQGTIADGAPVVPISAQLKYNIDVVCEYITNKIPIPERNFVDPPNMIVIRSFDVNKPGAEVDDIKGGVAGGSILKGVLKVNQKIEVRPGIVVKDEGGNIKCTPIFSRIISLYAEQNELQFAVPGGLIGVGTTIDPMLTRADRLVGQVLGEVGELPDVFVELEVNFFLLRRLLGVRTKGTEKQGKVSKLAKGEVLMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKMALSRRVEKHWRLIGWGQIQAGAMLDIPPASE
B8LL29_______________MSRKGLMEQDLSKLDVTKLNPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDEHCPRPMCYKAYGSGKEDSPLCEVSGFENTRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAGNESCPQPQTSEHLAAVEIMRLKHIIILQNKIDLIQESVAINQHEAIQKFIQGTIADGAPVVPISAQLKYNIDVVCEYITNKIPIPERNFVDPPNMIVIRSFDVNKPGAEVDEIKGGVAGGSILKGVLKVNQKIEVRPGIVVKDESGNIKCTPIFSRIISLYAEQNELQFAVPGGLIGVGTTIDPTLTRADRLVGQVLGEIGELPDVFVELEVNFFLLRRLLGVRTKGTEKQGKVSKLAKGEVLMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKMALSRRVEKHWRLIGWGQIQAGAMLDIPPASE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1984	28		71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain