SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene22003

Length: 2092 nt

UniGene Fasta

>sp_v3.0_unigene22003
ATGGTGTTTGTTCTGGATGTGTACTCGGAAAACATCATCGGGACAGCTTTGAAAAACGTGCCTCTTGGCATGCCACCGGCCCTTTACAGCTTGTGCATAGTGATTTATGTGGTCCACTTCCTGTTGCTTCATTCTCTGGCTGCAAATATTTCTTAACTTTCATTGATGATTTCTCCAGGCGCACTTGGGTATACTTCTTAAAACTCAAGAGTGAAGTGTTTAACACATTTTTGGCCTTCAAGGCCTTTGTTGAAAAACAATCTGGACATCAAATTCTTAAGCTAAGAACTGATAATGGGGGAGAATATGTTAAAAACACATTCATCAACTTTTGCATCGAGAATGGAATTCAAATGCAACATACTGTTCCATACACTCCACAACAAAATGGTGTAGCTGAAAGGAAGAATCGCACATTAAAGGAAATGGCTAATTGTATGCTGCAATCTAAAGGACTCAGTCTTAGTTTTTGGGCCGAAGCAATTAATTGTGCAAATTATATAATAAATCGCACTCCTACTAAGGTTCTAAAGAATATCACTCCAGAAGAAGCTTGGAGTTCAATTAAACCAGATGTAAGTCACTTTCGTGTTTTTGGAAGTGAAGCATGGGCCCATATTCCAGATGAAAAGCATAAAGCTTTAGAACCTAAGAGTGAGAAATGTACTTTTGTTGGATATTCTGAAGATGTAAAAGGTTATAGACTTATTCCATTTAAGTCCAAAAATGTTATCATTAGAAGAGATGTAAAATTTGATGAAAATAAATCGGCCTGCGAGCCTAGTCCGGCGGATGTGCCACCTCTTCCTATCTCTTCTACTTTTGAAAACATTTCTTCTTCAGATGATGAAAGTGAGGATGACAATCCTCCCCCACCTTCTCAGGATCCTCCTTCAGCTCCTCAACTTCCAAGATGGGTCCGTACTACTCGGGATGCAGCAAGTGATCTTGCCGGTGATCCTACAGATCAGCGACGTACACGTTCTCAGTTTGAAAGAGCCTCTTCTTTACTGGCTCAAGCTCCAGTAAATCATGATCCTGACACTTTTGCAGAAGCTTCAGGCCATCCACATTGGGAAGCAGCTATGAATGAAGAATATCATTCATTATTGGCAAATGATACATGGGATCTTGTTCCTCTACCAAAGGGACGAAAACTTGTAAGATGTAAATGGGTTTACAGAACCAAGTATGGACCAGATGGCAAAGTTGATAAACATAAAGCTCGTCTTGTTGCTAAGGGCTTTTCACAGGTTGAAGGCATTGACTACACTGAAACCTTCTCCCCAGTTGCCAAAATGAACTCTATCCGCCTTGTTCTTTCCCTTGCTGCCTCTTTTAAATGGGAAGTCCATCAGATGGATGTTAAATCTGCCTTCTTGCATGGGGACTTGCATGAAGAAATCTATATGGAACAACCCATTGGCTTCATCCAAACAGACTCCAGCCTTGTATGTCGACTTAAGAAATCTCTTTATGGTCTCAAGCAAGCTCCTCGGGCTTGGTATGCCAAAATGGATAGCTTTCTTTTAGAATCTGGCTTTTCTAGGTGTCATTCTGACAATACTGTCTACACCAAGAAAGTGGGCAACTCTCTTATCATCCTTGTTCTTTATGTTGATGATCTTATCCTTACTGGTAGTGATCCCAACCTTATAAACCATGTGAAGTCCAGCCTTAAAAGGAAATTTGAAATGACAGACTTAGGACACTTACACTATTTTCTCGGTCTTCAAGTCTTGCAATCCAAGGAGGGTATTTCCATTTCCCAGTCCAAGTATGCTTGTGATATTCTTCGTCATTTTCACATGGAAGACTGTAAGCCAGCTCCTTCTCCCTTTCAGTCTGGAGTCAAACTTTCAGTCTCTTGTACTTCTCCTGAAGTTGATGCTACCTTATACCGTCAACTTGTCGGAAAACTTTTGTATCTGACCCATACTCGTCCTGACCTTTCCTTTGTTGTTGGCCTTGTTGCTCGGTTTATGCAAACTCCCTGTGAAAGTCATTGGAAAGCAGCTAAAAGAATACTTCGTTATGTTCAAGGTACAATACAGTTTGGGATTCATTACAGTGCCAAAGCAGCTCCTCCCAT

Ace file of the UniGene sp_v3.0_unigene22003

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Copia-type polyprotein	-	-	2.23e-07	-

Source	Gene names
Sma3	At2g15650; F11I4_21; H0512B01.8; LOC_Os03g46450; LOC_Os03g61660; LOC_Os10g01750; LOC_Os11g05840; LOC_Os12g05520; LOC_Os12g23320; LYC_68t000004; OSIGBa0134J07.9; OSJNBa0056E06.5; OSJNBa0065H03.10; OSJNBa0078D06.27; OSJNBb0034I13.10; OSJNBb0036M02.16; Os08g

Source	GOs	Term	Type	Identity
Sma3	phosphopyruvate hydratase complex	GO:0000015	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	alpha-mannosidase activity	GO:0004559	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	mannose metabolic process	GO:0006013	Biological Process	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR010256	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 27 aas, your sequence is longer than subject: 579 - 363

Fln protein: MQHTVPYTPQQNGVAERKNRTLKEMANCMLQSKGLSLSFWAEAINCANYIINRTPTKVLKNITPEEAWSSIKPDVSHFRVFGSEAWAHIPDEKHKALEPKSEKCTFVGYSEDVKGYRLIPFKSKNVIIRRDVKFDENKSACEPSPADVPPLPISSTFENISSSDDESEDDNPPPPSQDPPSAPQLPRWVRTTRDAASDLAGDPTDQRRTRSQFERASSLLAQAPVNHDPDTFAEASGHPHWEAAMNEEYHSLLANDTWDLVPLPKGRKLVRCKWVYRTKYGPDGKVDKHKARLVAKGFSQVEGIDYTETFSPVAKMNSIRLVLSLAASFKWEVHQMDVKSAFLHGDLHEEIYMEQPIGFIQTDSSLVCRLKKSLYGLKQAPRAWYAKMDSFLLESGFSRCHSDNTVYTKKVGNSLIILVLYVDDLILTGSDPNLINHVKSSLKRKFEMTDLGHLHYFLGLQVLQSKEGISISQSKYACDILRHFHMEDCKPAPSPFQSGVKLSVSCTSPEVDATLYRQLVGKLLYLTHTRPDLSFVVGLVARFMQTPCESHWKAAKRILRYVQGTIQFGIHYSAKAAPP

Protein Length: 580

Fln nts: ATGGTGTTTGTTCTGGATGTGTACTCGGAAAACATCATCGGGACAGCTTTGAAAAACGTGCCTCTTGGCATGCCACCGGCCCTTTACAGCTTGTGCATAGTGATTTATGTGGTCCACTTCCTGTTGCTTCATTCTCTGGCTGCAAATATTTCTTAACTTTCATTGATGATTTCTCCAGGCGCACTTGGGTATACTTCTTAAAACTCAAGAGTGAAGTGTTTAACACATTTTTGGCCTTCAAGGCCTTTGTTGAAAAACAATCTGGACATCAAATTCTTAAGCTAAGAACTGATAATGGGGGAGAATATGTTAAAAACACATTCATCAACTTTTGCATCGAGAATGGAATTCAA_-_ATGCAACATACTGTTCCATACACTCCACAACAAAATGGTGTAGCTGAAAGGAAGAATCGCACATTAAAGGAAATGGCTAATTGTATGCTGCAATCTAAAGGACTCAGTCTTAGTTTTTGGGCCGAAGCAATTAATTGTGCAAATTATATAATAAATCGCACTCCTACTAAGGTTCTAAAGAATATCACTCCAGAAGAAGCTTGGAGTTCAATTAAACCAGATGTAAGTCACTTTCGTGTTTTTGGAAGTGAAGCATGGGCCCATATTCCAGATGAAAAGCATAAAGCTTTAGAACCTAAGAGTGAGAAATGTACTTTTGTTGGATATTCTGAAGATGTAAAAGGTTATAGACTTATTCCATTTAAGTCCAAAAATGTTATCATTAGAAGAGATGTAAAATTTGATGAAAATAAATCGGCCTGCGAGCCTAGTCCGGCGGATGTGCCACCTCTTCCTATCTCTTCTACTTTTGAAAACATTTCTTCTTCAGATGATGAAAGTGAGGATGACAATCCTCCCCCACCTTCTCAGGATCCTCCTTCAGCTCCTCAACTTCCAAGATGGGTCCGTACTACTCGGGATGCAGCAAGTGATCTTGCCGGTGATCCTACAGATCAGCGACGTACACGTTCTCAGTTTGAAAGAGCCTCTTCTTTACTGGCTCAAGCTCCAGTAAATCATGATCCTGACACTTTTGCAGAAGCTTCAGGCCATCCACATTGGGAAGCAGCTATGAATGAAGAATATCATTCATTATTGGCAAATGATACATGGGATCTTGTTCCTCTACCAAAGGGACGAAAACTTGTAAGATGTAAATGGGTTTACAGAACCAAGTATGGACCAGATGGCAAAGTTGATAAACATAAAGCTCGTCTTGTTGCTAAGGGCTTTTCACAGGTTGAAGGCATTGACTACACTGAAACCTTCTCCCCAGTTGCCAAAATGAACTCTATCCGCCTTGTTCTTTCCCTTGCTGCCTCTTTTAAATGGGAAGTCCATCAGATGGATGTTAAATCTGCCTTCTTGCATGGGGACTTGCATGAAGAAATCTATATGGAACAACCCATTGGCTTCATCCAAACAGACTCCAGCCTTGTATGTCGACTTAAGAAATCTCTTTATGGTCTCAAGCAAGCTCCTCGGGCTTGGTATGCCAAAATGGATAGCTTTCTTTTAGAATCTGGCTTTTCTAGGTGTCATTCTGACAATACTGTCTACACCAAGAAAGTGGGCAACTCTCTTATCATCCTTGTTCTTTATGTTGATGATCTTATCCTTACTGGTAGTGATCCCAACCTTATAAACCATGTGAAGTCCAGCCTTAAAAGGAAATTTGAAATGACAGACTTAGGACACTTACACTATTTTCTCGGTCTTCAAGTCTTGCAATCCAAGGAGGGTATTTCCATTTCCCAGTCCAAGTATGCTTGTGATATTCTTCGTCATTTTCACATGGAAGACTGTAAGCCAGCTCCTTCTCCCTTTCAGTCTGGAGTCAAACTTTCAGTCTCTTGTACTTCTCCTGAAGTTGATGCTACCTTATACCGTCAACTTGTCGGAAAACTTTTGTATCTGACCCATACTCGTCCTGACCTTTCCTTTGTTGTTGGCCTTGTTGCTCGGTTTATGCAAACTCCCTGTGAAAGTCATTGGAAAGCAGCTAAAAGAATACTTCGTTATGTTCAAGGTACAATACAGTTTGGGATTCATTACAGTGCCAAAGCAGCTCCTCCCAT

Fln Alignment:

Contig22003___MNEEYHSLLANDTWDLVPLPKGRKLVRCKWVYRTKYGPDGKVDKHKARLVAKGFSQVEGIDYTETFSPVAKMNSIRLVLSLAASFKWEVHQMDVKSAFLHGDLHEEIYMEQPIGF-IQTDSSLVCRLKKSLYGLKQAPRAWYAKMDSFLLESGFSRCHSDNTVYTKKVGNSXXXXXXXXXXXXXTGSDPNLINHVKSSLKRKFEMTDLGHLHYFLGLQVLQSKEGISISQSKYACDILRHFHMEDCKPAPSPFQSGVKLSVSCTSPEVDATLYRQLVGKLLYLTHTRPDLSFVVGLVARFMQTPCESHWKAAKRILRYVQGTIQFGIHYS
B8LKV8_______________MNKEMESIKKNDTWDLVDLPKEKECISVKWVYKTKYKANGELDKHKARLVAKGFAQEYGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYT-KVNEQGQILIVCLYVDDLIYTGNLTIDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSREQNEMDFDSTIFRKLVGSLMYLTATRPDIMYGVSLISRFMDTPKNSHWQAGKRLLRYIAGTMNHGILYS

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
364		75		25	0.996473
430		66		33	0.997452
460	33		66		0.997452
490			66	33	0.997452
505	33			66	0.997452
563	33	66			0.997452
566		33		66	0.997452
584		75		25	0.996473
682		66		33	0.997452
766	50		25	25	1.0
789	50		50		1.0
791	50		50		1.0
821		33		66	1.0
841		33		66	1.0
843	33		66		0.997452
861	33		66		0.997452
867		33		66	1.0
920		33		66	0.997452
924	66		33		0.997452
940		33	66		1.0
1318		66		33	0.997452
1342		33		66	0.997452
1345	33	33		33	0.997753
1355	33		66		0.997452
1396		66	33		0.997452
1402		33		66	0.997452
1403	33		66		0.997452
1442	66	33			0.997452
1464	33		66		0.997452
1541	20			80	0.995493
1542	20	60		20	0.99255
1544	20		80		0.995493
1549	20			80	0.995493
1550		20		80	0.995493
1551	20	80			0.995493
1553	80			20	0.995493
1565	25		75		0.996473
1570	25			75	0.996473
1586	75	25			0.996473
1587	75		25		0.996473
1594		75		25	0.996473
1597		75	25		0.996473
1601	25	75			0.996473
1604	75	25			0.996473
1609		75		25	0.996473
1636		75		25	0.996473
1639		25	25	50	0.995533
1665	75		25		0.996473
1679		75		25	0.996473
1681			66	33	0.997452
1690	33		66		0.997452
1694	75		25		0.996473
1698		50	50		1.0
1700	75		25		0.996473
1707	25		75		0.996473
1724		75		25	0.996473
1733		75		25	0.996473
1739		25		75	0.996473
1742	75			25	0.996473
1760	33		66		0.997452
1767		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain