SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21972

Length: 390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene21972
CTGTTGTTTGTATCCACTGGCAAATAATGGGAACGAACTTACCCTTGATATTGCAGGTGTCGACATGGCTACTTTCATGTGGTGAACAACCAGTACGCGCACTGGGAAATGTATGCAATCGGTGGGAGCGCAAACCCAACAATTAACAGTGAAGGCAACAGATTCGTAGCGCCCGATAACGCCAACGCTAAGGAGGTAACTAAACGGCTGTATGCAAGCGTCGAAGAATGGAATCAGTGGAACTGGAGATCGGCAGGAGACCTAATGCTGAACGGTGCATATTTTGTTCCGTCAGGCGCCGGAGCGGCTGATAACTATGCCTTAGCCTCCAGTCTCGGGGCGAAGTCAGCGTTCCTTGTGGAAACCATTACCGGAGAGGCAGGGGTTTTA

Ace file of the UniGene sp_v3.0_unigene21972 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative pectate lyase 14 n=4 Tax=Arabidopsis RepID=PLY14_ARATH	-	-	5.99756e-43	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Pectate lyase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectate lyase.	EC:4.2.2.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		0.0	%

Source	Gene names
Sma3	9612; AT3G01270; AT59; At1g04680; At1g11920; At1g14420; At1g67750; At2g02720; At3g01270; At3g07010; At3g24230; At3g24670; At3g27400; At3g53190; At3g54920; At4g13210; At4g13710; At4g22080; At4g22090; At4g24780; At5g15110; At5g48900; At5g55720; At5g63180; B

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	pectate lyase activity	GO:0030570	Molecular Function	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	defense response, incompatible interaction	GO:0009814	Biological Process	-
Sma3	cell wall modification involved in multidimensional cell growth	GO:0042547	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF11	IPR001434	-	-
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectate lyase, N-terminal	IPR007524	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G13210.2	-	74%
RefSeq	Arabidopsis thaliana	NP_193057.4	putative pectate lyase 14 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002321242.1	predicted protein, partial [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS41

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 57 aas, your sequence is shorter than subject: 130 - 490

Fln protein: LLFVSTGK*WERTYP*YCRCRHGYFHVVNNQYAHWEMYAIGGSANPTINSEGNRFVAPDNANAKEVTKRLYASVEEWNQWNWRSAGDLMLNGAYFVPSGAGAADNYALASSLGAKSAFLVETITGEAGVL

Protein Length: 131

Fln nts: CTGTTGTTTGTATCCACTGGCAAATAATGGGAACGAACTTACCCTTGATATTGCAGGTGTCGACATGGCTACTTTCATGTGGTGAACAACCAGTACGCGCACTGGGAAATGTATGCAATCGGTGGGAGCGCAAACCCAACAATTAACAGTGAAGGCAACAGATTCGTAGCGCCCGATAACGCCAACGCTAAGGAGGTAACTAAACGGCTGTATGCAAGCGTCGAAGAATGGAATCAGTGGAACTGGAGATCGGCAGGAGACCTAATGCTGAACGGTGCATATTTTGTTCCGTCAGGCGCCGGAGCGGCTGATAACTATGCCTTAGCCTCCAGTCTCGGGGCGAAGTCAGCGTTCCTTGTGGAAACCATTACCGGAGAGGCAGGGGTTTTA

Fln Alignment:

Contig21972___RCRHGYFHVVNNQYAHWEMYAIGGSANPTINSEGNRFVAPDNANAKEVTKRLYASVEEWNQWNWRSAGDLMLNGAYFVPSGAGAADNYALASSLGAKSAFLVETITGEAGVL
B8LS41_______________RCRHGYFHIVNNHYSHWEMYAIGGSANPTINSEGNRFIAPDNANAKQVTKRLNAVDEEWMRWNWRSAGDLMVNGAFFVPSGAGTGNNYALASSVGAKSAFLVKTITEDAGVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain