SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21961

Length: 1584 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21961

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ENTH/VHS family protein [Arabidopsis thaliana] emb\|CAB62324.1\| putative protein [Arabidopsis thaliana] gb\|AAL32940.1\| putative protein [Arabidopsis thaliana] gb\|AAM91150.1\| putative protein [Arabidopsis thaliana] gb\|AEE78170.1\| ENTH/VHS family protein [Ar	-	-	5.99756e-43	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-
Sma3	Epsin domain, N-terminal	IPR001026	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002312094.1	predicted protein [Populus trichocarpa]	0.0	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLE6

Fln msg:

Fln protein: MGSLHLGQFKKQASFFLREKLKTARLVLTDVTEAELMTEEATNSDPWGPETRRMAEISRAAFEVDDYSRIVNILHKRLAVSDTKSWREAFKTLVLLEYLLTHGPESFAADFRSEKDVLHQLTHFEHVDELGFDWGQSIQRKAERILELLNQKKLLKEERDRARRVSRGITGSGSFSSRAASSPAFESFESTFNDIPEGASHEEGLNETTQMKTKKYDISKDEGASYEEEVNETTQMKTKNYENDIKIYSKGYSSPGISTNITSQDEELSSGKVYTNNIGPTSDHVGSSETKDINNPYHSNTEWQPFQGRKLFTSTSHYFRKPDVVNLMSDQDKDQIPVQANGIPPKTNTSDRFHAYGYRLQSEPSVNCSKGKQDSSPTACSGSEIDPFDDSDNDTATQCLLPDKHKRCPTSIWDFHDSAGLAIKI*

Protein Length: 427

Fln nts: ATTCTTTCATAGCATCATCGATTTTCACAATGCAACTGTATCTCCGCAAAACATTACAGTGCATTATGGGTTCTGGGACAGACATGAACCATTTCTAGGGTGATCTTATGAATGGTTTTGACGGCTTATTTGGAAGTAGCAGCCAATGATAAGAAATTTTTGAACATATTTGATAAAACTTTGATAAGAAATTTTTGAGTACATCTGATAAAACCTTAAG_-_ATGGGTAGTCTGCATCTTGGCCAATTCAAGAAGCAAGCTTCATTTTTTCTCAGGGAGAAGCTCAAAACAGCTAGGCTTGTGCTAACGGATGTCACTGAGGCAGAATTGATGACAGAGGAAGCAACCAACAGTGATCCATGGGGACCGGAGACCCGTAGAATGGCTGAGATCTCTCGTGCTGCCTTTGAAGTGGACGATTACTCGAGAATTGTCAACATTTTACATAAGAGGTTGGCTGTCTCGGATACGAAGAGTTGGAGAGAGGCTTTCAAAACATTAGTACTTTTGGAGTACCTGTTAACACATGGTCCAGAGAGTTTTGCAGCAGACTTTCGAAGTGAAAAGGATGTTCTTCATCAACTCACTCATTTCGAGCATGTGGATGAGCTAGGGTTTGATTGGGGCCAGAGTATCCAAAGAAAAGCAGAGAGAATCTTAGAACTTCTTAACCAAAAGAAACTGCTGAAAGAAGAGCGCGATCGCGCTCGGAGAGTTTCGCGTGGAATAACGGGATCCGGAAGCTTTTCTTCAAGAGCAGCCTCTTCACCTGCTTTTGAAAGTTTTGAATCAACTTTCAATGATATACCAGAGGGAGCATCACATGAAGAGGGACTTAACGAGACTACACAAATGAAAACCAAGAAGTATGATATATCAAAGGATGAGGGGGCATCATATGAAGAGGAAGTTAATGAGACTACACAAATGAAAACCAAGAACTATGAGAATGACATCAAAATATATTCAAAGGGATATTCTAGCCCTGGAATTTCAACCAACATTACTAGTCAAGATGAAGAGTTAAGTTCTGGCAAAGTATATACAAACAATATTGGCCCAACATCTGATCATGTGGGAAGTTCTGAAACTAAAGATATTAATAATCCATATCATTCCAACACTGAATGGCAACCATTTCAAGGAAGAAAGCTGTTTACATCTACTAGCCATTATTTTAGAAAGCCTGATGTTGTTAACTTGATGAGTGATCAAGATAAGGACCAAATTCCAGTCCAAGCTAATGGTATCCCTCCCAAGACTAATACTTCTGATAGATTTCATGCATATGGTTATAGGCTTCAAAGTGAGCCCTCTGTGAATTGCAGCAAAGGTAAGCAGGATAGCAGCCCCACAGCTTGTAGTGGCAGTGAAATTGATCCATTTGATGATAGTGATAATGACACAGCAACTCAATGTTTGCTACCAGACAAACATAAAAGGTGTCCAACTAGTATTTGGGATTTTCATGATTCTGCTGGCTTAGCAATCAAGATCTAG___TGCTCCTTTACAATATAAAACAAAAATGTATATGCTGCCTACAATAATTGTTAATATATCAGTATGTATTTTGCTTCTGCTGTAAC

Fln Alignment:

Contig21961___MGSLHLGQFKKQASFFLREKLKTARLVLTDVTEAELMTEEATNSDPWGPETRRMAEISRAAFEVDDYSRIVNILHKRLAVSDTKSWREAFKTLVLLEYLLTHGPESFAADFRSEKDVLHQLTHFEHVDELGFDWGQSIQRKAERIXXXXXXXXXXXXXRDRARRVSRGITXXXXXXXXXXXXXXXXXXXXTFNDIPEGASHEEGLNETTQMKTKKYDISKDEGASYEEEVNETTQMKTKNYENDIKIYSKGYSSPGISTNITSQDEELSSGKVYTNNIGPTSDHVGSSETKDINNPYHSNTEWQPFQGRKLFTSTSHYFRKPDVVNLMSDQDKDQIPVQANGIPPKTNTSDRFHAYGYRLQSEPSVNCSKGKQDSSPTACSGSEIDPFDDSDNDTATQCLLPDKHKRCPTSIWDFHDSAGLAIKI
B8LLE6_______________MDSLHLGQFKKQASFFIREKLKTARLVLTDVTEAELMTEEATNNDPWGPETRRMAEISRAAFEVDDYSRIVNILHKRLSVLDTKSWRETFKTLVLLEYLLTHGPESFAADFRSEKDVLHQLTHFQHVDDLGFDWGQSIQRKAERILELLNQEKLLKEERNRARRVSRGITGSGSVSSRPTSLPAFESSESTFNDIP-----------------------KELGASYEEGVDQTTEMKTKKYENGIKIYSRGFSSPGISTNITTQDEELSFGEAHTHTISPRSDNVGSSETKNDNNAYHSNTEWQPFQGRKLVTSTGHSFRKPDVVNLMSDQDKHRIPVQANSTPPKTNTSDGFHAYGYRLQSEPLVNCSKDKQDSSPTACSGSEIDPFDDIDNDTATQCLLSNNQKRCPTSILDFNDSAGLAIKI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
936	75			25	0.996473
937	75		25		0.996473
938	75		25		0.996473
939		75	25		0.996473
949		25		75	0.996473
1111		14		85	0.993533
1201			25	75	1.0
1246		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain