SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21925

Length: 3064 nt

UniGene Fasta

>sp_v3.0_unigene21925
AGATAGAGTCTTATTAACAGTGAATTTTGCTATTCTGAAGCCATTTACATGCGATAATGCCAATACATCTAACTGTGGGTTACCGACACTGTTATCTGCAGGAAATCAAATCGTCAGGCGAAGGGAGGTGTTGACGCCGCTGAGAGGGTCTGCAACTTGACAGAGTGATCACTTGGAAACCTGTTCTATTAGCTGCTGCCTTTGTGACACCTCGTTGCAGGAAGAATGCAGGCGCCCGCTGTTCCCCGGCCTCGGCTGGAGTTTCTCAACAAAAAACCCCCACCGAACTATGTGGCCGGGCTGGGCCGAGGGGCCACGGGGTTCACCACGCGGTCTGATATCGGGCCTGCGAGGGCCGCCCCGGACCTGCCGGACCGGTCCGCCACTACCATAGGAGGCGCGTCAGCGGGTAGAGGGCGGGGCAAGGGCAGTGCCGGCGCCGCGGGTGCCGAAGAGGAGGAAGAAGTAGACGACGAGAAGGGATATGATGAGAACCAGAAGTTCGATGAATTTGAGGGTAACGATGTGGGTTTGTTTGCCTCTGCCGAATACGATGAGGACGACAAGGAAGCCGATGCCGTCTGGGAGAGCATTGATAAAAGAATGGACTCTCGCCGCAAGGACCGGCGGGAGGCAAGGCTGAAACAGGAGATTGAGAAGTACAGAGCCTCAAACCCTAAAATTACAGAGCAGTTTGCAGACCTTAAGAGGAAATTGTATACGCTCTCCACCGAGGAGTGGGACAGCATACCAGAGATTGGGGATTATTCGCTTCGGAACAAGAAAAAGAGGTTTGAGAGTTTTGTTCCAGTTCCTGATACATTGCTGGAGAAGGCCAGGCAAGAGAAGGAGCACGTCAGTGCATTGGATCCGAAAAGCAGGGCTGCCGGTGGCACGGAGACACCCTGGGCACAGACGCCGGTGACTGATCTCACGGCTGTTGGAGAGGGGAGAGGGACTGTGCTGTCTTTGAAGCTCGATAGGCTATCTGATTCGGTTTCAGGGTTGACTGTAGTGGATCCCAAGGGGTATCTGACTGATCTCAAGAGTATGAAGATTACCAGTGATGCGGAGATTTCGGATATTAAAAAGGCCAGATTGTTGCTCAAGTCGGTTACGCAGACTAACCCGAAGCATCCTCCTGGTTGGATTGCGGCGGCGAGGCTAGAGGAGGTTGCAGGGAAGATACAGGCTGCACGGCATTTGATTCAAAAAGGTTGTGAAGAATGCCCAAAGAATGAAGATGTATGGTTGGAGGCTTGCAGATTGGCAAGTCCGGATGAAGCCAAAGCGGTCATTGCGCGCGGTGTAAAGGCGATCCCCAATTCGGTGAAGCTGTGGATGCAAGCTTCAAAGCTTGAACATGATGATGCGAACAAGAGCCGAGTGCTGAGGAAGGGGCTGGAGCATATTCCTGACTCTGTGAGGCTTTGGAAGGCTGTGGTGGAGTTGGCAAATGAGGAGGATGCCCGGATTTTGCTTCACAGGGCAGTGGAGTGCTGTCCACTACATGTGGAGTTATGGCTTGCGTTGACAAGGCTTGAGACATACGATCAGGCAAAGAAGGTTCTCAACAAGGCTAGGGAGAAGCTTTCCAAGGAACCTTCGATCTGGATCACTGCTGCGAAGCTTGAGGAGGCCAATGGAAACACAACCATGGTGGGCAAGATTATTGAGAGGGGAATCAGGTCCCTGCAGAGGGAAGGGGTAGTGATTGACAGAGAAGCTTGGATGAAGGAGGCAGAGGCCGCAGAGCGAGCAGGGTCTGGTGTGACTTGCCAGGCAATAATTCGCAACACAATTTCTATTGGAGTTGAAGAGGAAGATAGAAAGAGAACATGGGTTGCAGATGCAGAGGAATGCAAGAAGAGGGGATCAATTGAAACTGCACGTGCGATCTATGCACATGCCCTTACAGTGTTTGTTGCTAAGAAAAGTATTTGGCTTAAGGCTGCCCAGCTAGAGAAGAGCCATGGAACTAGAGAATCATTGGATGCCTTACTGAGAAAAGCAGTGACATACTGTCCGAGAGCAGAGGTGCTATGGCTGATGGGAGCTAAGGAAAAGTGGCTTGCAGGGGATGTCCCATCCGCTCGAGCAATTTTGCAGGAGGCTTATGCTGCAATACCCAACTCAGAGGAGATTTGGTTAGCTGCATTCAAGCTGGAGTTTGAAAATCATGAGCCTGAGAGAGCAAGGATGCTTCTCGCCAAGGCTCGTGAGAGAGGTGGTACAGAAAGAGTCTGGATGAAGTCAGCAATTGTTGAAAGAGAGCTGGGAAACACTGCGGAGGAGAGGTCACTGCTTGATGAAGGGCTTAAAAAGTATCCTGCATTCTTTAAATTGTGGCTAATGCGAGGACAGCTTGAAGATCGTCTTGGGAACTTGGAGGCTGCACGTGAGGTCTATGAGCAAGGCCTTAAGAACTGTCCAGGGTGCATTCCTTTATGGCTCTCAGCTGCTAAATTGGAGGAAAAAATGGGTGGTCTGAGCAAGGCGAGGGCAATTCTTACTATAGCTAGAAAGAGGAACCCTCAAAATCCAGAGCTCTGGCTTTCTGCTATCAGGTCTGAATCAAGGCATGGCAATAAGAAAGAGAGTGAGATCCTGATGGCTAAGGCGTTACAGGAGTGCCCGACCAGTGGCATATTATGGGCAGCATCAATTGAGATGGCTCCAAGGCCTCAGAGAAAGAGCAAGAGTATGGATGCACTCAAGAGATGTGATCATGATCCATATGTGATTGCAGCTGTTGCCAAGCTGTTCTGGAATGATAGGAAGGTTGATAAGGCCAGGAATTGGTTGAACAGGGCAGTCACTCTTGCACCAGACAATGGGGATTTTTGGGCCCAATACTACAAGTTTGAACTTCAGCATGGAACTGAGGAGATCCAACAGGATGTTCTGAAGAGATGCATTGCTGCAGAACCAAGGCATGGAGAGCGGTGGGCATCTATATCAAAAGCAGTTGAAAATTCACATTTGCCTGTTGAAGCTATTTTAAAGAAAGTAGTGGTTGCTTTAGGCAAGGAAGAAGGGGTTATAGGAGTTTGAAAAACTTTTT

Ace file of the UniGene sp_v3.0_unigene21925

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative pre-mRNA splicing factor [Oryza sativa Japonica Group] gb\|AAP54456.1\| U5 snRNP-associated 102 kDa protein, putative, expressed [Oryza sativa Japonica Group] gb\|EAY79087.1\| hypothetical protein OsI_34194 [Oryza sativa Indica Group]	-	-	80%
FL-Next	sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	22%
Sma3	Putative uncharacterized protein	-	-	-

Source	Gene names
Sma3	VITISV_024588;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	PRP1 splicing factor, N-terminal	IPR010491	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3	Ubiquitin	IPR000626	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G03430.1	STA1, EMB2770 pre-mRNA splicing factor-related chr4:1517411-1520500 REVERSE LENGTH=1029	78%
RefSeq	Arabidopsis thaliana	NP_192252.1	pre-mRNA-processing factor 6 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002319361.1	predicted protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FNS4

Fln msg: your sequence is longer than subject: 943 - 662

Fln protein: MQAPAVPRPRLEFLNKKPPPNYVAGLGRGATGFTTRSDIGPARAAPDLPDRSATTIGGASAGRGRGKGSAGAAGAEEEEEVDDEKGYDENQKFDEFEGNDVGLFASAEYDEDDKEADAVWESIDKRMDSRRKDRREARLKQEIEKYRASNPKITEQFADLKRKLYTLSTEEWDSIPEIGDYSLRNKKKRFESFVPVPDTLLEKARQEKEHVSALDPKSRAAGGTETPWAQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSDAEISDIKKARLLLKSVTQTNPKHPPGWIAAARLEEVAGKIQAARHLIQKGCEECPKNEDVWLEACRLASPDEAKAVIARGVKAIPNSVKLWMQASKLEHDDANKSRVLRKGLEHIPDSVRLWKAVVELANEEDARILLHRAVECCPLHVELWLALTRLETYDQAKKVLNKAREKLSKEPSIWITAAKLEEANGNTTMVGKIIERGIRSLQREGVVIDREAWMKEAEAAERAGSGVTCQAIIRNTISIGVEEEDRKRTWVADAEECKKRGSIETARAIYAHALTVFVAKKSIWLKAAQLEKSHGTRESLDALLRKAVTYCPRAEVLWLMGAKEKWLAGDVPSARAILQEAYAAIPNSEEIWLAAFKLEFENHEPERARMLLAKARERGGTERVWMKSAIVERELGNTAEERSLLDEGLKKYPAFFKLWLMRGQLEDRLGNLEAAREVYEQGLKNCPGCIPLWLSAAKLEEKMGGLSKARAILTIARKRNPQNPELWLSAIRSESRHGNKKESEILMAKALQECPTSGILWAASIEMAPRPQRKSKSMDALKRCDHDPYVIAAVAKLFWNDRKVDKARNWLNRAVTLAPDNGDFWAQYYKFELQHGTEEIQQDVLKRCIAAEPRHGERWASISKAVENSHLPVEAILKKVVVALGKEEGVIGV*

Protein Length: 944

Fln nts: AGATAGAGTCTTATTAACAGTGAATTTTGCTATTCTGAAGCCATTTACATGCGATAATGCCAATACATCTAACTGTGGGTTACCGACACTGTTATCTGCAGGAAATCAAATCGTCAGGCGAAGGGAGGTGTTGACGCCGCTGAGAGGGTCTGCAACTTGACAGAGTGATCACTTGGAAACCTGTTCTATTAGCTGCTGCCTTTGTGACACCTCGTTGCAGGAAGA_-_ATGCAGGCGCCCGCTGTTCCCCGGCCTCGGCTGGAGTTTCTCAACAAAAAACCCCCACCGAACTATGTGGCCGGGCTGGGCCGAGGGGCCACGGGGTTCACCACGCGGTCTGATATCGGGCCTGCGAGGGCCGCCCCGGACCTGCCGGACCGGTCCGCCACTACCATAGGAGGCGCGTCAGCGGGTAGAGGGCGGGGCAAGGGCAGTGCCGGCGCCGCGGGTGCCGAAGAGGAGGAAGAAGTAGACGACGAGAAGGGATATGATGAGAACCAGAAGTTCGATGAATTTGAGGGTAACGATGTGGGTTTGTTTGCCTCTGCCGAATACGATGAGGACGACAAGGAAGCCGATGCCGTCTGGGAGAGCATTGATAAAAGAATGGACTCTCGCCGCAAGGACCGGCGGGAGGCAAGGCTGAAACAGGAGATTGAGAAGTACAGAGCCTCAAACCCTAAAATTACAGAGCAGTTTGCAGACCTTAAGAGGAAATTGTATACGCTCTCCACCGAGGAGTGGGACAGCATACCAGAGATTGGGGATTATTCGCTTCGGAACAAGAAAAAGAGGTTTGAGAGTTTTGTTCCAGTTCCTGATACATTGCTGGAGAAGGCCAGGCAAGAGAAGGAGCACGTCAGTGCATTGGATCCGAAAAGCAGGGCTGCCGGTGGCACGGAGACACCCTGGGCACAGACGCCGGTGACTGATCTCACGGCTGTTGGAGAGGGGAGAGGGACTGTGCTGTCTTTGAAGCTCGATAGGCTATCTGATTCGGTTTCAGGGTTGACTGTAGTGGATCCCAAGGGGTATCTGACTGATCTCAAGAGTATGAAGATTACCAGTGATGCGGAGATTTCGGATATTAAAAAGGCCAGATTGTTGCTCAAGTCGGTTACGCAGACTAACCCGAAGCATCCTCCTGGTTGGATTGCGGCGGCGAGGCTAGAGGAGGTTGCAGGGAAGATACAGGCTGCACGGCATTTGATTCAAAAAGGTTGTGAAGAATGCCCAAAGAATGAAGATGTATGGTTGGAGGCTTGCAGATTGGCAAGTCCGGATGAAGCCAAAGCGGTCATTGCGCGCGGTGTAAAGGCGATCCCCAATTCGGTGAAGCTGTGGATGCAAGCTTCAAAGCTTGAACATGATGATGCGAACAAGAGCCGAGTGCTGAGGAAGGGGCTGGAGCATATTCCTGACTCTGTGAGGCTTTGGAAGGCTGTGGTGGAGTTGGCAAATGAGGAGGATGCCCGGATTTTGCTTCACAGGGCAGTGGAGTGCTGTCCACTACATGTGGAGTTATGGCTTGCGTTGACAAGGCTTGAGACATACGATCAGGCAAAGAAGGTTCTCAACAAGGCTAGGGAGAAGCTTTCCAAGGAACCTTCGATCTGGATCACTGCTGCGAAGCTTGAGGAGGCCAATGGAAACACAACCATGGTGGGCAAGATTATTGAGAGGGGAATCAGGTCCCTGCAGAGGGAAGGGGTAGTGATTGACAGAGAAGCTTGGATGAAGGAGGCAGAGGCCGCAGAGCGAGCAGGGTCTGGTGTGACTTGCCAGGCAATAATTCGCAACACAATTTCTATTGGAGTTGAAGAGGAAGATAGAAAGAGAACATGGGTTGCAGATGCAGAGGAATGCAAGAAGAGGGGATCAATTGAAACTGCACGTGCGATCTATGCACATGCCCTTACAGTGTTTGTTGCTAAGAAAAGTATTTGGCTTAAGGCTGCCCAGCTAGAGAAGAGCCATGGAACTAGAGAATCATTGGATGCCTTACTGAGAAAAGCAGTGACATACTGTCCGAGAGCAGAGGTGCTATGGCTGATGGGAGCTAAGGAAAAGTGGCTTGCAGGGGATGTCCCATCCGCTCGAGCAATTTTGCAGGAGGCTTATGCTGCAATACCCAACTCAGAGGAGATTTGGTTAGCTGCATTCAAGCTGGAGTTTGAAAATCATGAGCCTGAGAGAGCAAGGATGCTTCTCGCCAAGGCTCGTGAGAGAGGTGGTACAGAAAGAGTCTGGATGAAGTCAGCAATTGTTGAAAGAGAGCTGGGAAACACTGCGGAGGAGAGGTCACTGCTTGATGAAGGGCTTAAAAAGTATCCTGCATTCTTTAAATTGTGGCTAATGCGAGGACAGCTTGAAGATCGTCTTGGGAACTTGGAGGCTGCACGTGAGGTCTATGAGCAAGGCCTTAAGAACTGTCCAGGGTGCATTCCTTTATGGCTCTCAGCTGCTAAATTGGAGGAAAAAATGGGTGGTCTGAGCAAGGCGAGGGCAATTCTTACTATAGCTAGAAAGAGGAACCCTCAAAATCCAGAGCTCTGGCTTTCTGCTATCAGGTCTGAATCAAGGCATGGCAATAAGAAAGAGAGTGAGATCCTGATGGCTAAGGCGTTACAGGAGTGCCCGACCAGTGGCATATTATGGGCAGCATCAATTGAGATGGCTCCAAGGCCTCAGAGAAAGAGCAAGAGTATGGATGCACTCAAGAGATGTGATCATGATCCATATGTGATTGCAGCTGTTGCCAAGCTGTTCTGGAATGATAGGAAGGTTGATAAGGCCAGGAATTGGTTGAACAGGGCAGTCACTCTTGCACCAGACAATGGGGATTTTTGGGCCCAATACTACAAGTTTGAACTTCAGCATGGAACTGAGGAGATCCAACAGGATGTTCTGAAGAGATGCATTGCTGCAGAACCAAGGCATGGAGAGCGGTGGGCATCTATATCAAAAGCAGTTGAAAATTCACATTTGCCTGTTGAAGCTATTTTAAAGAAAGTAGTGGTTGCTTTAGGCAAGGAAGAAGGGGTTATAGGAGTTTGA___AAAACTTTTT

Fln Alignment:

Contig21925___HVELWLALTRLETYDQAKKVLNKAREKLSK-EPSIWITAAKLEEANGNTTMVGKIIERGIRSLQREGVVIDRE---AWMKEAEAAERAGSGVTCQAIIRNTISIGVEEEDRKRTWVADAEECK--KRGSIETARAIYAHALTVF--VAKKSIWLKAAQLEKSHGTRESLDALLRKAVTYCPRAEVLWLMGAKEKWLAGDVPSARAILQEAYAAIPNSEEIWLAAFKLEFENHEPERARMLLAKARERGGTER-VWMKSAIVERELGNTAEERSLLDEGL---KKYPAFFKLWLMRGQLEDRLGNLEAAREVYEQGLKNCPGCIPLWLSAAKLEEKMGGLSK
Q9FNS4_______________YVVLGKTLVQQKRYDEARQLYQDGCANTGNVNPYIWSAWGWLEARTGN-------VERA-RKLYDAAVVVDGTHACAWHKWGMLEKGQGNFTRARDLWMQGIQRCRRKPQSQNAYLYNALGCMAAQLGRVGEARSWFEEGTRSAEGAASVALWQAWAVLEAKQGDPTVVRYLFRKALGANPRSRYVHLAWALWERRQGNPQHCLALLRRGCELNPTDPALYQAWALVEKQAGRIERARELFEQGLRADPSDLYMWQAYGVMEAEQGNMDRARQLFQEGVWADPRSPSTVYVFHAWGALEWQAGNVQTARELFKAAVRVDPKSETTWASWIAMESELGEIER

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
711	66			33	0.997452
726		66		33	0.997452
818			33	66	0.997452
998	20		80		0.995493
1007	40		60		1.0
2157			88	11	0.999952
2323	60			30	1.0
2360	87		12		0.992554
2384	25		75		0.996473
2386	80			20	0.995493
2387		80	20		0.995493
2388			20	80	0.995493
2389			20	80	0.995493
2455		25		75	0.996473
2462			25	75	0.996473
2597	87		12		0.992554
2603			20	80	0.999996
2618	10			90	0.90298
2619	90	10			0.90298
2621			88	11	0.923564
2622			88	11	0.923564
2639	12		87		0.992554
2673	90		10		0.90298
2674			10	90	0.90298
2700	90		10		0.90298
2783	10		90		0.90298
2985		30		69	1.0
2987			80	19	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain