SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21918

Length: 1487 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21918

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 716B2 n=2 Tax=Picea sitchensis RepID=C16B2_PICSI	-	-	82%
FL-Next	sp=Cytochrome P450 716B2; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Cytochrome P450 CYPA2	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	0.0	-

Source	Gene names
Sma3	CYP716B2;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002331427.1	cytochrome P450 [Populus trichocarpa]	0.0	51%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q50EK0

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 451 - 497

Fln protein: MIWKEAATVLHKAQHLEKPPFIFTVFIASFIGFAAFSYLVTNRRTRKLRGIPPGTFGWPLIGETLEFLGCQRRGSPQDFCDRRTQKYGNVFTTSLVGHPTVVLCSPQGNRFLFANENKLVVNSWPTSVGNLFRSSLITAVGDDAKRLRRILMTFLRPEALQKFVGRVDSMTKDHLAEYWIGKNEVRALPLLKRYTFSLACDLFATINNREEQARFWHHFMVFVKGVMQVPIDLPGTRYNKARRAANAIRQQLGSLLNERKYALAMGKASPEQDLLSFLLSNADEQGSSLTDNEIEDNILLLLYAGHDTSSSTLTVLLKFLAENPQCYEEVLREQLDIASSKKAGQLLEWGDLQRMKYSWRVAQEALRLYPAAQGTFRKAIKDFTYEGFTIPKGWKLYWTVNSTHRKSEYFSDPDKFDPSRFEGEGPPPYTFVPFGGGPRMCPGNEFARMEI

Protein Length: 452

Fln nts: CACAACATAGATATATATATATGTATAGGGCCTTCACCCCCAACAATAAGCCACTGTTTGTATGTGATCTCCGGGCCTTGAGCTTATACGTTTTTCAGTTCCAGGTTTGGAGCCCGTCAAATTATACTTACC_-_ATGATTTGGAAAGAAGCTGCGACGGTGCTACACAAGGCCCAACATCTGGAGAAGCCACCCTTCATCTTCACTGTATTTATCGCATCTTTTATAGGATTCGCCGCCTTCTCATATCTCGTAACTAACCGTAGAACTAGGAAATTACGAGGAATCCCGCCCGGCACCTTTGGATGGCCTTTGATCGGCGAGACATTAGAATTTCTGGGATGCCAGAGAAGGGGAAGTCCCCAGGATTTCTGTGACCGTCGAACACAGAAGTATGGAAACGTGTTCACCACTTCCCTTGTTGGGCACCCGACAGTGGTATTATGTAGTCCCCAAGGCAACCGCTTCTTGTTCGCTAACGAGAACAAACTGGTGGTAAATTCATGGCCCACCTCTGTGGGAAATCTCTTCAGAAGTTCTTTAATTACAGCAGTTGGAGACGATGCGAAAAGGTTGAGGAGAATCCTGATGACGTTCCTGAGGCCGGAAGCCCTTCAAAAATTTGTAGGGCGAGTGGATTCCATGACCAAAGATCACCTGGCCGAGTACTGGATCGGTAAAAATGAGGTGAGGGCTTTGCCTCTATTGAAACGTTACACTTTCTCTCTCGCTTGTGACTTGTTTGCCACCATAAACAATCGAGAAGAGCAAGCGAGGTTTTGGCATCATTTTATGGTTTTTGTGAAAGGAGTAATGCAGGTTCCCATAGATCTACCTGGTACGCGATATAACAAAGCCAGGCGCGCAGCTAATGCCATTCGCCAACAACTTGGCAGCCTTCTTAATGAGAGGAAATATGCATTGGCTATGGGAAAAGCTTCTCCAGAGCAAGATCTATTGTCTTTCCTGCTCTCTAATGCTGACGAGCAGGGTTCGTCTCTCACAGACAACGAGATTGAGGACAATATCCTTCTGCTATTATATGCAGGTCATGACACCAGCAGTTCTACTTTGACGGTGCTGCTTAAATTTTTGGCGGAGAACCCTCAGTGCTATGAAGAAGTACTAAGAGAGCAACTGGATATAGCAAGTTCAAAGAAGGCAGGGCAACTTCTAGAATGGGGGGACCTCCAAAGAATGAAATATTCGTGGAGAGTTGCTCAGGAAGCGCTTCGGCTGTACCCTGCTGCTCAAGGAACTTTTCGCAAGGCCATCAAAGATTTCACATACGAGGGATTCACAATCCCTAAAGGATGGAAGTTGTATTGGACCGTCAATTCGACCCACCGGAAATCTGAGTATTTCAGCGACCCGGACAAATTCGATCCATCGAGATTTGAGGGAGAGGGACCTCCTCCCTACACGTTTGTTCCATTTGGAGGTGGCCCGCGAATGTGCCCGGGTAATGAGTTTGCAAGAATGGAAATTCT

Fln Alignment:

Contig21918___MIWKEAATVLHKAQHLEKPPFIFTVXXXXXXXXXXXXYLVTNRRTRKLRGIPPGTFGWPLIGETLEFLGCQRRGSPQDFCDRRTQKYGNVFTTSLVGHPTVVLCSPQGNRFLFANENKLVVNSWPTSVGNLFRSSLITAVGDDAKRLRRILMTFLRPEALQKFVGRVDSMTKDHLAEYWIGKNEVRALPLLKRYTFSLACDLFATINNREEQARFWHHFMVFVKGVMQVPIDLPGTRYNKARRAANAIRQQLGSLLNERKYALAMGKASPEQDLLSFLLSNADEQGSSLTDNEIEDNILLLLYAGHDTSSSTLTVLLKFLAENPQCYEEVLREQLDIASSKKAGQLLEWGDLQRMKYSWRVAQEALRLYPAAQGTFRKAIKDFTYEGFTIPKGWKLYWTVNSTHRKSEYFSDPDKFDPSRFEGEGPPPYTFVPFGGGPRMCPGNEFARMEI
Q50EK0_______________MVWKEAVSVLQKAQELKEPPLMFTVFLASFIGLAFFFYLISNHRTKAWRGIPPGTFGWPLIGETLEFLGCQRKGNPRDFFDSRTQKYGNVFTTSLVGHPTVVFCSPEGNRFLFSNENKLVVNSWPSSVGNLFRSSLITTVGDDAKRLRRILMTFLRPEALREFVGRVDSMTKRHLAEHWIGKDEVTALPLLKRYTFSLACDLFASINNKDDLGRLWLHFMVFVKGVMQIPIDLPGTRYNKAKHAANAIRQQLGSIINERKIGLEAGNASPEQDLLSFLLSNVDEQGESLTDNEIQDNILLLLYAGHDTSSSTLTVLLKFLAENPHCYEEVLREQLDIAGSKEAGQLLEWEDLQRMKYSWRVAQEALRLFPAAQGSFRKAIKEFIYDGFTIPKGWKMYWTVNSTHRKSEYFSNPETFDPSRFEGEGPPPYTFVPFGGGPRMCPGNEFARLEI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
56		33	66		0.997452
61			33	66	0.997452
157	33		66		0.997452
261	16		83		0.994512
421	16			83	0.994512
1012		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
11	22	AT AT AT AT AT AT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain