SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21903

Length: 562 nt

UniGene Fasta

>sp_v3.0_unigene21903
AGCCAAGAAGCGAATCATTGATCCATTCGACACGTAAAGAATGGTACGACATTAGAGCTCCTTCTATCTTCAAGAATCAGTACGTTGGAAAGACTTTCGTCAATCAGACCCAAGGAAAAGTTCTTGCGTCAGACGGTTTAAAGGGACGCGTTTTTGAAGCATCTCTTGCTGATCTAAACAAAGACGAAGACCGTGCCTATCGTACAATCTCTTTTGTTGCCGAGGCTGTGGAAGGAAATCAAGTACTCACCGGATTCCATGGAATGTCCCTAACCACGGATAAGCTCAAATCCCTGGTACGAAAATAGGCAATCTCTCATCGAGTCTGTCATTGAAGTAAAGACTACCGACAACTATGTGATTCGCATGTTCTGCATTGGATTTACCAAGAAACGGTCCAACCAGAAGAAGATTACTTGCTACGCACAATCTTCCCAAATCAGACAAATCAGAAAGAAAATGGTTGACATCATGACCCGTGAAGCATCCACTTGTGATATTCGTGCTTTGTTCCAGAAGTTCATCACAGAGAGCATCAGCAAACAAGTAGAATTGGAATGTC

Ace file of the UniGene sp_v3.0_unigene21903

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyc07-like protein n=1 Tax=Solanum tuberosum RepID=Q2XPW5_SOLTU	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	40S ribosomal protein S3a	-	-	1.032e-17	-

Source	Gene names
Sma3	AT4G34670; At3g04840; At4g34670; BIS289; CHLREDRAFT_168484; CYC07; GSVIVT00020038001; GSVIVT00031140001; MICPUCDRAFT_49648; MICPUN_95475; OSTLU_28528; Os12g0406200; OsI_38068; OsJ_35850; PHYPADRAFT_162682; PHYPADRAFT_169774; PHYPADRAFT_204003; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S3Ae	IPR001593	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Glycoside hydrolase, family 43	IPR006710	-	-
Sma3	Ribosomal protein S3Ae, conserved site	IPR018281	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G34670.1	Ribosomal protein S3Ae chr4:16548724-16550222 FORWARD LENGTH=262	60%
RefSeq	Arabidopsis thaliana	NP_195193.1	40S ribosomal protein S3a-2 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002328352.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV66

Fln msg: warning!, putative chimeric sequence! or repetitive structure query STOP codon is far from subject stop. Distance to subject end: 16 aas, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning,

Fln protein: PRSESLIHSTRKEWYDIRAPSIFKNQYVGKTFVNQTQGKVLASDGLKGRVFEASLADLNKDEDRAYRTISFVAEAVEGNQVLTGFHGMSLTTDKLKSLVRK*AISHRVCH*SKDYRQLCDSHVLHWIYQETVQPEEDYLLRTIFPNQTNQKENG*

Protein Length: 156

Fln nts: AGCCAAGAAGCGAATCATTGATCCATTCGACACGTAAAGAATGGTACGACATTAGAGCTCCTTCTATCTTCAAGAATCAGTACGTTGGAAAGACTTTCGTCAATCAGACCCAAGGAAAAGTTCTTGCGTCAGACGGTTTAAAGGGACGCGTTTTTGAAGCATCTCTTGCTGATCTAAACAAAGACGAAGACCGTGCCTATCGTACAATCTCTTTTGTTGCCGAGGCTGTGGAAGGAAATCAAGTACTCACCGGATTCCATGGAATGTCCCTAACCACGGATAAGCTCAAATCCCTGGTACGAAAATAGGCAATCTCTCATCGAGTCTGTCATTGAAGTAAAGACTACCGACAACTATGTGATTCGCATGTTCTGCATTGGATTTACCAAGAAACGGTCCAACCAGAAGAAGATTACTTGCTACGCACAATCTTCCCAAATCAGACAAATCAGAAAGAAAATGGTTGA___CATCATGACCCGTGAAGCATCCACTTGTGATATTCGTGCTTTGTTCCAGAAGTTCATCACAGAGAGCATCAGCAAACAAGTAGAATTGGAATGTC

Fln Alignment:

Contig21903___TRKEWYDIRAPSIFKNQYVGKTFVNQTQGKVLASDGLKGRVFEASLADLNKDEDRAYRTISFVAEAVEGNQVLTGFHGMSLTTDKLKSLVRK*AISHRVCH*SKDYRQLCDSHVLHWIYQETVQPEEDYLLRTIFPNQTNQKEN
A9NV66_______________TKKDWYDVKAPSTFNTRTVGKTLVTRTQGTKIASEGLKHRVFELSLADLQNDEDQAFRKIKLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRK-------------WQTLIEAHV-------DVKTTDSYTLRMFCIGFTKRRPN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain