SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21882

Length: 536 nt

UniGene Fasta

>sp_v3.0_unigene21882
ACCATTCCCCTCAAGCCAAGCAAGACCTCTGATATATTGCAGTTGGTTCACTCAAACATATCCAGTATGATGCCTGTGAACTCTTTGGGAGGATATTTATATTATCTCATTTTTATAGATGATTATTCTCGCAAGACTTGGATATATTTCTTGAAAAGGAAGGTTGAAGTGTTTTCCTGGTTTTGACACTTCAAAGCCTTGACCGAGAATCAAACCGAAAAGAAGATCAAAATCCTAAGGATTGATAATGGCACTGAATATGAATCCAATGAGTTTCATGACTTTTGCAAAGACGCTGGCATTAAGAGGGAGACCACTACACCCTATACTCCTGAGCAGAATGGTGTGGTGGAAAGGAAGAACCGTACGATTGTGGAAGTTGTCTGTGCTATGCTCCATGATCAAAGACTTCTGAAGTTTCTATGGGTCGAAGCTGCAAACGCTGCTGTATATGTACAAAACTGATGCTCCCATCAAGCATTTGGTTCCAAAACTCCTAAAGAAATGTTCCCTAGTAAAAAGCCCGACGTATCTCA

Ace file of the UniGene sp_v3.0_unigene21882

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=1 Tax=Drosophila melanogaster RepID=B6V6Z8_DROME	-	-	9.00054e-42	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	4.704e-32	-

Source	Gene names
Sma3	AT4g04380; AT4g10460; At2g13930; At2g15700; At2g17490; At2g21460; B1130H05.2; F11I4_21; F28L22.3; F7L13.40; F9K21.100; Fourf gag/pol; LOC_Os03g11850; LOC_Os03g21419; LOC_Os03g26290; LOC_Os03g27910; LOC_Os03g29130; LOC_Os03g31200; LOC_Os03g46450; LOC_Os03g

Source	GOs	Term	Type	Identity
Sma3	phosphopyruvate hydratase complex	GO:0000015	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	oxygen evolving complex	GO:0009654	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	extrinsic to membrane	GO:0019898	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	-
Sma3	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Photosystem II PsbQ, oxygen evolving complex	IPR008797	-	-
Sma3		IPR010256	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 107 aas, your sequence is shorter than subject: 178 - 407

Fln protein: TIPLKPSKTSDILQLVHSNISSMMPVNSLGGYLYYLIFIDDYSRKTWIYFLKRKVEVFSWF*HFKALTENQTEKKIKILRIDNGTEYESNEFHDFCKDAGIKRETTTPYTPEQNGVVERKNRTIVEVVCAMLHDQRLLKFLWVEAANAAVYVQN*CSHQAFGSKTPKEMFPSKKPDVS

Protein Length: 179

Fln nts: ACCATTCCCCTCAAGCCAAGCAAGACCTCTGATATATTGCAGTTGGTTCACTCAAACATATCCAGTATGATGCCTGTGAACTCTTTGGGAGGATATTTATATTATCTCATTTTTATAGATGATTATTCTCGCAAGACTTGGATATATTTCTTGAAAAGGAAGGTTGAAGTGTTTTCCTGGTTTTGACACTTCAAAGCCTTGACCGAGAATCAAACCGAAAAGAAGATCAAAATCCTAAGGATTGATAATGGCACTGAATATGAATCCAATGAGTTTCATGACTTTTGCAAAGACGCTGGCATTAAGAGGGAGACCACTACACCCTATACTCCTGAGCAGAATGGTGTGGTGGAAAGGAAGAACCGTACGATTGTGGAAGTTGTCTGTGCTATGCTCCATGATCAAAGACTTCTGAAGTTTCTATGGGTCGAAGCTGCAAACGCTGCTGTATATGTACAAAACTGATGCTCCCATCAAGCATTTGGTTCCAAAACTCCTAAAGAAATGTTCCCTAGTAAAAAGCCCGACGTATCTCA

Fln Alignment:

Contig21882___LQLVHSNISSMMPVNSLGGYLYYLIFIDDYSRKTWIYFLKRKVEVFSWF*HFKALTENQTEKKIKILRIDNGTEYESNEFHDFCKDAGIKRETTTPYTPEQNGVVERKNRTIVEVVCAMLHDQRLLKFLWVEAANAAVYVQN*CSHQAFGSKTPKEMFPSKKPDVS
B8LKX7_______________LHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVS

SNPs (tot: 3)

Position	A %	C %	T %	Probability
350		20	80	0.995493
413		20	80	0.995493
489	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain