SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21863

Length: 528 nt

UniGene Fasta

>sp_v3.0_unigene21863
GGTCGTCAAGGATATCCTCGCCGACAAGGTTGAGAAGGTCGTCTCCTCCCAACGTATCGTTGAGTCTCCCTGCTGCCTCGTCACTGGAGAGTACGGATGGTCCGCCAATATGGAGAGAATCATGAAGGCCCAAGCCCTCCGCGACAACTCCATGTCAACCTACATGTCCTCCAAGAAGACCCTCGAACTCAACCCAGCCCACCCCATCATCGTTGAGCTGAGAAAGAAGGTCGAAGCCGATAAGGGAGACAAGACCGTCAAGGACTTGGTCCACCTCCTCTTCGAAACTGCCCTCCTCACTTCTGGATTCTCTTTGGATGAGCCCAACGGCTTTGCTTCTCGCATCCACCGCATGATCAAGCTTGGTCTCAGCATTGACGACGACACTAGCGTTTCTGCAGGCGAGACTGCCCCCGAAGACTTGCCACCACTCGAGAGCGACGCTGAGTCCTCCAAGATGGAAGAGGTCGACTAAAAAAGATAAAACTTATTCAATAGTACTGTTTTAAAATAATAATATTTCGCTTG

Ace file of the UniGene sp_v3.0_unigene21863

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fiber protein Fb9 (Fragment) n=1 Tax=Gossypium barbadense RepID=Q8GT83_GOSBA	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Heat shock protein 90	-	-	1.033e-29	-

Source	Gene names
Sma3	At5g52640; At5g56000; At5g56010; At5g56030; CHLREDRAFT_138117; GSVIVT00002550001; GSVIVT00004280001; GSVIVT00005457001; GSVIVT00033436001; GSVIVT00037730001; HSC80; HSP81-1; HSP81-2; HSP81-3; HSP81.2; HSP82; HSP83; HSP83A; HSP90; HSP90-1; HSP90-2; HSP90A;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	protein stabilization	GO:0050821	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Late embryogenesis abundant protein, LEA-18	IPR018930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G56010.1	HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 heat shock protein 81-3 chr5:22681410-22683911 FORWARD LENGTH=699	73%
RefSeq	Arabidopsis thaliana	NP_200414.1	heat shock protein 81-2 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002329963.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMS8

Fln msg: your sequence is shorter than subject: 158 - 209

Fln protein: VVKDILADKVEKVVSSQRIVESPCCLVTGEYGWSANMERIMKAQALRDNSMSTYMSSKKTLELNPAHPIIVELRKKVEADKGDKTVKDLVHLLFETALLTSGFSLDEPNGFASRIHRMIKLGLSIDDDTSVSAGETAPEDLPPLESDAESSKMEEVD*

Protein Length: 159

Fln nts: GGTCGTCAAGGATATCCTCGCCGACAAGGTTGAGAAGGTCGTCTCCTCCCAACGTATCGTTGAGTCTCCCTGCTGCCTCGTCACTGGAGAGTACGGATGGTCCGCCAATATGGAGAGAATCATGAAGGCCCAAGCCCTCCGCGACAACTCCATGTCAACCTACATGTCCTCCAAGAAGACCCTCGAACTCAACCCAGCCCACCCCATCATCGTTGAGCTGAGAAAGAAGGTCGAAGCCGATAAGGGAGACAAGACCGTCAAGGACTTGGTCCACCTCCTCTTCGAAACTGCCCTCCTCACTTCTGGATTCTCTTTGGATGAGCCCAACGGCTTTGCTTCTCGCATCCACCGCATGATCAAGCTTGGTCTCAGCATTGACGACGACACTAGCGTTTCTGCAGGCGAGACTGCCCCCGAAGACTTGCCACCACTCGAGAGCGACGCTGAGTCCTCCAAGATGGAAGAGGTCGACTAA___AAAAGATAAAACTTATTCAATAGTACTGTTTTAAAATAATAATATTTCGCTTG

Fln Alignment:

Contig21863___VVKDILADKVEKVVSSQRIVESPCCLVTGEYGWSANMERIMKAQALRDNSMSTYMSSKKTLELNPAHPIIVELRKKVEADKGDKTVKDLVHLLFETALLTSGFSLDEPNGFASRIHRMIKLGLSIDDDTSVSAGETAPEDLPPLE--SDAESSKMEEVD
A9NMS8_______________VIKDILGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPENPIMDELRKRAEVDKNDKSVKDLVLLMYETALLTSGFSLDDPNTFGNRIHRMMKLGLSIDEDESIPDTDA---EMPPLEEAADAEGSKMEEVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain