SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21842

Length: 603 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene21842 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S13 n=4 Tax=Schizosaccharomyces RepID=RS13_SCHPO	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	40S ribosomal protein S13	-	-	2.85e-14	-

Source	Gene names
Sma3	ACI39; At3g60770; At4g00100; CHLREDRAFT_169450; F6N15.7; GSVIVT00007258001; GSVIVT00026373001; GSVIVT00038451001; LOC_Os08g02400; LOC_Os08g02410; MICPUCDRAFT_49744; MICPUN_108906; OJ1699_E05.12; OSTLU_40147; Os02g0677800; Os07g0572900; Os08g0117200; Os08g

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	-
Sma3	Ribosomal protein S13/S15, N-terminal	IPR012606	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G00100.1	ATRPS13A, RPS13, PFL2, RPS13A ribosomal protein S13A chr4:37172-38123 FORWARD LENGTH=151	76%
RefSeq	Arabidopsis thaliana	NP_567151.1	40S ribosomal protein S13-2 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002322414.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
150	85		14		0.993533
171	85		14		0.993533
305	14		85		0.993533
315	14		85		0.993533
321	85		14		0.993533
333	85		14		0.993533
339		85	14		0.993533
396	16	83			0.994512
462		33		66	1.0
468	66		33		1.0
486	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain