SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21818

Length: 1643 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21818

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus communis RepID=B9T828_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein-tyrosine phosphatase, SIW14-like	IPR004861	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G03960.1	Phosphotyrosine protein phosphatases superfamily protein chr4:1887673-1889000 FORWARD LENGTH=198	54%
RefSeq	Arabidopsis thaliana	NP_567261.1	tyrosine specific protein phosphatase family protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002317187.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNY6

Fln msg: atg_distance in limit (1-15): atg_distance = 1,

Fln protein: MASPSIQFQNPNENRPPMALKRLETPKSSRAHKEALWPNTSIDVLLLKFEDTCFSVSRGRLGKTHWGRIADAVNAVCSANYSGVQCKYKWNRLKKSYNKAKLHGETSRFVHYKRVERIVQKASGEKLHEDDEEEEEEEEEMASEDDGVDSICEAASIESKPSSVSMSATEDDDVPRRPQKRGVTLKSFGNKMEQSMNNLAQSMKNIEKTRTDKMMKLLDAQMEITSILVQNNKRLKPSDGVAAGRAWSMNEAALMCQQQGLVSSFVPPLNFAMVDKGVYRSGFPNHANFPFLKTLKLRSIIYLCPEPCPEVNMKFLRAEEIQIFQFGIICYKEPKLDIYEDDISDALKILLDIRNHPLLIHCKTGKRPTSCLVGCLRKMQNWCLASVFDEYERFAGTKTRVSDLQFIEQFKVANK*

Protein Length: 417

Fln nts: TT_-_ATGGCATCGCCCTCAATTCAATTCCAGAACCCCAATGAGAACCGCCCGCCCATGGCCCTCAAGAGATTAGAGACGCCTAAGTCCTCAAGAGCTCACAAGGAAGCTCTCTGGCCCAACACCTCCATCGATGTCTTGCTCCTAAAGTTCGAAGACACGTGCTTCAGTGTCAGCCGGGGCCGATTGGGGAAAACCCACTGGGGCCGAATCGCCGATGCTGTCAACGCTGTCTGCAGCGCTAATTACAGTGGTGTCCAGTGCAAATACAAGTGGAATCGCCTGAAGAAATCCTATAACAAGGCTAAATTGCATGGGGAGACCTCCAGGTTTGTGCACTATAAGCGTGTTGAGCGAATTGTGCAGAAGGCTTCGGGGGAGAAGCTCCATGAAGATGACGAAGAGGAGGAGGAGGAGGAGGAAGAAATGGCTTCTGAGGATGATGGTGTGGATAGCATCTGTGAAGCAGCCTCCATTGAATCCAAGCCCAGTTCGGTTTCTATGAGTGCCACCGAGGATGATGATGTGCCCAGACGACCTCAGAAGAGAGGGGTGACCCTCAAGTCATTTGGGAATAAGATGGAACAGAGCATGAACAACCTTGCACAGTCCATGAAAAACATAGAGAAGACCAGGACGGATAAAATGATGAAGCTTCTTGATGCCCAGATGGAGATTACCTCAATTCTAGTCCAAAACAACAAAAGGTTAAAACCAAGTGACGGAGTAGCTGCAGGCAGAGCTTGGTCAATGAATGAGGCGGCTTTGATGTGCCAACAACAAGGACTGGTTTCTAGTTTTGTCCCTCCGTTGAATTTTGCAATGGTAGATAAGGGGGTTTATAGATCAGGATTCCCCAACCATGCAAACTTTCCGTTTCTGAAGACCTTGAAGCTTCGCTCTATAATTTATCTCTGTCCCGAGCCTTGTCCTGAAGTCAATATGAAGTTTCTACGAGCTGAAGAAATTCAAATCTTCCAGTTTGGAATAATATGCTATAAGGAGCCTAAATTGGATATATATGAGGATGACATAAGCGATGCATTGAAGATTTTACTTGATATAAGAAACCATCCTCTATTAATTCATTGCAAAACAGGGAAGCGCCCTACAAGTTGTTTGGTAGGATGTTTACGTAAAATGCAGAATTGGTGCCTTGCATCAGTGTTTGATGAATATGAGCGATTTGCTGGAACAAAAACCCGAGTATCAGATTTGCAATTCATAGAACAGTTCAAGGTAGCAAATAAATAG___AATCACAGTGATTCCTCGACAATTTTCTCAATTATCAGGGGTTAAAATCTGGGGGCCTGTGGCAACTTCATAACAAATATGATTTGCATTTCACTAAGTGCTGTGAAATGAATGCAAAGGGCAAGTAATTTCCTTTCAACATTGCTCAGGTTACAATATTATTCATTGAGTTCAGCTTGGAAATAGTTTCTTCGGCTGTGCTATATGGTTCATTTACCACATGTGAACGTTGATCCTTGGTCATGGAATTTAATTATTTATTTAGTGGCTAATAATTGACTGTTGAGTTTCCGATTTGATGTCAACGGCATTGAAGTCAATGGCAGTTCTGTTGCCAGCATAAAGAGAAGTGTGCAATTCTGTTGCACCTATGACGAAAATCTTTAATTTTGT

Fln Alignment:

Contig21818___MASPSIQFQNPNENRPPMALKRLETPKSSRAHKEALWPNTSIDVLLLKFEDTCFSVSRGRLGKTHWGRIADAVNAVCSANYSGVQCKYKWNRLKKSYNKAKLHGETSRFVHYKRVERIVQKASGEKLHXXXXXXXXXXXX-MASEDDGVDSICEAASIESKPSSVSMSATEDDDVPRRPQKRGVTLKSFGNKMEQSMNNLAQSMKNIEKTRTDKMMKLLDAQMEITSILVQNNKRLKPSDGVAAGRAWSMNEAALMCQQQGLVSSFVPPLNFAMVDKGVYRSGFPNHANFPFLKTLKLRSIIYLCPEPCPEVNMKFLRAEEIQIFQFGIICYKEPKLDIYEDDISDALKILLDIRNHPLLIHCKTGKRPTSCLVGCLRKMQNWCLASVFDEYERFAGTKTRVSDLQFIEQFKVAN
B8LNY6_______________MASPSIQFQNPNENRPALALKRIETTKSSRAQKEALWPNTSIDVLLLKFEDTCFSVSRGRLGKTHWGRIADAVNAVCSANYSGVQCKYKWNRLKKSYNKAKLHGETSRFVYYKRVERIVQKASGEKLHEDEEEEEEEEEEEMASEDDGVDSICEAASIESKPSSASMSATEDDDVHRRPQKRGVTLKSFGDKMEQSMNNLAQSMKNIEKTRTDKMMKLLDAQLEITSMLVQNNKRLKPSDGVAAGRAWAMNEAGLMCQQQGRVSSFVPPLNFAMVDKGVYRSGFPNHANFPFLKTLKLRSIIYLCPEPYSEVNMKFLRAEEIQIFQFGIIGYKEPIIGISEDDIRDALKILLDIRNHPVLIHCKTGKHPTSCLVGCLRKIQNWCLATVFDEYQRFVGIKARVSDLQFIERFNVPN

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
544	40		60		1.0
994			11	88	0.923564
995	88			11	0.923564
997	88	11			0.923564
998	88			11	0.923564
1003		88		11	0.923564
1019	87	12			0.992554
1079		12		87	0.992554
1199	14		14		0.984337
1264	14		14		0.984337
1265	14	14	71		0.984337
1302	80		20		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
399	418	GAG GAG GAG GAG GAG GAG GA	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain