SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21809

Length: 3583 nt

UniGene Fasta

>sp_v3.0_unigene21809
GAAGGGTGGGGCAAAGAGGGGCGTATTCTACACTGCTGAACAGATGGAACTTGTGAGACCTATGCTTGAGGCTGTGGGATGGCCTTTACTCGCGGCATTTTCAGTGACAATGGAGGACAGTGATAATAAACCTAGGGTTCTTCTTTGTATGGAGGGATTTAGACTAGGCATCCATCTTACAAGGGTGCTTGGCATGTATACCATGAGATATGCTTTTTTGACATCACTAGTAAGATTTACATTTCTGCATGCACCAAAGGAGATGCGGAGCAAAAATGTAGAGGCGTTACGGACCTTGCTGATATTGAGCGACACTGAGACTGATGCATTGCAGGATACTTGGAATGCTGTCTTAGAATGTGTTTCAAGGCTTGAGTATATTACATCAACACCATCTATTGCTGCCACGGTTATGCAGGGTTCAAATCAGATATCGAGGGATTCTTTGCTTCAGTCACTAAAAGAACTTACTGGAAAGCCAACTGAACAAGTATTTGTGAATAGTGTAAAGTTACCGAGTGATGCTATTGTGGAGTTTTTCACAGCATTATGTGGTGTCTCTGCTGAGGAACTGAAACAGACACCTGCCCGCGTTTTTAGTCTGCAAAAACTTGTTGAGATAAGTTACTACAACATGGCCCGGATACGCATGGTTTGGGCTAGAATATGGTCAGTTCTCTCACATCACTTTATCTCTGCGGGAAGCCACCATGATGAGAAGATTTCTATGTATGCAATTGACTCGCTAAGACAGCTTGGTATGAAATATTTGGAGAGGGCAGAACTTGCTAAGTTTACCTTTCAGAATGACATCTTGAAACCATTTGTTATCCTCATGCGAAATAGTAGAAGTGCAACTATTCGTACTCTGATTGTTGACTGCATTGTACAGATGATCAAATCGAAGGTTGGGAGCATCAAATCTGGCTGGAGAAGTGTGTTTATGATATTTACAGCTGCTGCTGACGATGAAACAGAATCCATTGCTGAAAGTGCATTTGAGAACGTGGAGCAAGTGGTCTTAGAACACTTTGATCAGGTTGTTGGGGATTGCTTCATGGATTGTGTCAACTGTCTTATTGGATTTGCTAACAATAAAAGCAGTCCACGAATTAGCTTGAAGGCCATTGCTCTGCTTCGTATCTGTGAAGATCGGCTTGCAGAGGGTCTAATTCCAGGTGGGGCCTTGAAACCTGTGGAAGTTATTGGCATAGATGCAGACACTGATGTAACAGAACATTATTGGTTTCCAATGCTTGCGGGATTGTCAGATTTAACCTCTGATCCTCGGACAGAAGTGAGGAATTGTGCACTTGAGGTGCTTTTTGATCTGTTGAAGGAGAGAGGTCACAAATTCTCATCAGCATTCTGGGAAAATGTATTTCATCGTGTATTGTTCCCCATATTTGATCAAGTGAGACATGCAGGAAAGGATGGCAATGTGCATGGTTCTGGGGACCAGTGGCTTCGTGAAACATGTATTCATTCCCTTCAACTGCTTTGTGATCTCTTCAGCAGCTTTTATAAGGAAGTTTCATTTATGCTACCATCACTGCTGGGACTGTTGTTAGATTGTGCTAAAAAGCCAGACCAAGCTGTAGCTTCAATTTCTTGTGGTGCTTTGGTACATCTTATAAAGGTTGGAGGTCACCAATTCAATGATAAGGATTGGGATACTTTATTGACAAGCATTCGCGATGCATCCTACACGACCCAACCCTTAGAACTATTGAACACACAGGGTTTTGATTATACAAGGAAAACTATGAGTATGTCAAGTACCCAAGCCATGAAAGGAGATCGAACTCCATCTACAATTGCTACTGATGGTGCAGGGTCAGATGGAGACACTTATAGCTATGAGAATGGAAACTCATTTGCCAGTACACCACAACGAATTAGTAATGGTGATGTTCAAAGGCAACAGAGTCTGTCTGGTGTGGAAGTGTGGGTTCAAGATGGCCAAGGGAGGTCAAACCTCGAGAATTCTGGAGGCATGTCATCATCAATGGATGTAAGGTCACCAAGAGGAAATCTGCCTAGGAATCAAACCTTTGGACAAAAACTAATGGGAAACATGATGGATACACTTCTGCTTAAAAATCTTACATTTAAGCAAAAGGGACATGCAGCAGATGTTCTAGTTCCAACATCTCCTACTGAGGTACCTGATATTTTAGAGCCAGTGCCCATGGAGAGTGAAGAGAACCCAATATTGACATGTATAAGAGGGAAATGTGTTACTCAACTTCTATTGCTGGGTGCAATTGACTGTATCCAGAAAAACCATTGGAATAGATTACAGCCCTCTCACAAGATAGTTATAATGGATATATTGCTATCTATTCTGGACTTTGCGGCTTCTTACAATTCATCTGCAAAGCTTAGGATGCGAATGCATCAGATTCCAGCTGACAGGTTGCCTGTCAATATTCTACGTCAGGAAATTGAAGCAACACGCATTTATTTGGAAGTATTACATAAAAGCGCTGGGCAGGATAACTTGAATGGTGAAGATTTTAGAAATAATATTTCAAATTTGGATGATTCATCTGCATCTAATGTATCCAATCACGAGGACATTAAAAAAGGAAGAGGGGAAGCTCAGAGAAATAGCAGAGCAAAAGCTAGTGTCATTTTGTGCACAGGTTTTGAAGGACACATCTGATCTTCAGCCTGGTCCTGGTGAAGCTGTTGATGCTGATGTTCATCGTGTTCTTGTTTTACGCTCCCCAGTCATTGTTAAGGTGTTGAGTGGTATGTGCATTATGAATAAAAATATCTTCAAGAGACACCTTGGGGAGTTTTTCCCTTCTGTTACAAAACTTGTGTGCAGTGACCAGATGGATGTGCGGCGGGCATTGGGTGACCTCTTTAAGAAACAGCTAATAGGCCTTTTGCCTTGATTTCAACAAATTTGAATAATCTTGTATCCTGGTTTCAGTGCCCATTATTTTTTCATTATTTGGTCATTCTTTGACCTAAGAAGATCTGTAGTCACTCAAAAGGTGTTTTCCATATTTCCAAGATCATTGTTGGCTCTCTAAGATAATGACCACTTGGTTTCATCTCTTAGATGATGATGCAGCCAGTTTACATGTCTAGATAGCATCATCTTGAACCAGTGACATGCATGTCAAGATGGCACTTATCCTTTCAAAAGTTTTGATTACAGCCAATGGTTCTCCATTTATTTCCTTTTGTTATACATCTCTTAAAATTACGGAACTGCAAGATTATGCCTTGTTTTAACTAAAGGGTGAAGAGCGACTCTAGATAATAATTCTTTTATATAAATAGGTTGTGAGGTTCTGCCAACAGAATGGTAGTGCGAATTGTAGTTCCTATGTCTTCCATCCATTACAAGTGTATTGTTCTTATTCTCAATTCGAGGCTCTCCATTTTATTGTAAATAAATTTAGCAGTTCCTGGTCAAATTAACATTCAACTTAAACTTATCTCACTGGTTCTTTTGTGTTTATAAAGGCATATGTTGAAGAAGAGTTAATGTTAATTGTTTGAATAGGTAATCACTTGAGACTCTTCATCGTCAGCTATGTGCTGTTTCCATTTACCTGGAAAT

Ace file of the UniGene sp_v3.0_unigene21809

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	guanine nucleotide-exchange-like protein [Arabidopsis thaliana]	-	-	0.0	63%
FL-Next	sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	20%
Sma3	Guanine nucleotide-exchange protein-like	-	-	1.122e-08	-

Source	Gene names
Sma3	At3g43300; At4g38200; CHLREDRAFT_148829; F7K15_150; GSVIVT00016348001; GSVIVT00026361001; GSVIVT00036299001; OJ1112_E08.119; OJ1112_E08.120; OJ1773_H01.101; Os07g0564700; OsI_17371; OsJ_24760; Ot04g04420; PHYPADRAFT_104287; PHYPADRAFT_117145; PHYPADRAFT_1

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	ARF guanyl-nucleotide exchange factor activity	GO:0005086	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of ARF protein signal transduction	GO:0032012	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	SEC7-like	IPR000904	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Domain of unknown function DUF1981, SEC7 associated	IPR015403	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G43300.1	ATMIN7, BEN1 HOPM interactor 7 chr3:15234235-15245034 REVERSE LENGTH=1758	68%
RefSeq	Arabidopsis thaliana	NP_189916.4	guanine nucleotide-exchange factor [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002309445.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q42510

Fln msg: your sequence is shorter than subject: 889 - 1451

Fln protein: KGGAKRGVFYTAEQMELVRPMLEAVGWPLLAAFSVTMEDSDNKPRVLLCMEGFRLGIHLTRVLGMYTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLILSDTETDALQDTWNAVLECVSRLEYITSTPSIAATVMQGSNQISRDSLLQSLKELTGKPTEQVFVNSVKLPSDAIVEFFTALCGVSAEELKQTPARVFSLQKLVEISYYNMARIRMVWARIWSVLSHHFISAGSHHDEKISMYAIDSLRQLGMKYLERAELAKFTFQNDILKPFVILMRNSRSATIRTLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDETESIAESAFENVEQVVLEHFDQVVGDCFMDCVNCLIGFANNKSSPRISLKAIALLRICEDRLAEGLIPGGALKPVEVIGIDADTDVTEHYWFPMLAGLSDLTSDPRTEVRNCALEVLFDLLKERGHKFSSAFWENVFHRVLFPIFDQVRHAGKDGNVHGSGDQWLRETCIHSLQLLCDLFSSFYKEVSFMLPSLLGLLLDCAKKPDQAVASISCGALVHLIKVGGHQFNDKDWDTLLTSIRDASYTTQPLELLNTQGFDYTRKTMSMSSTQAMKGDRTPSTIATDGAGSDGDTYSYENGNSFASTPQRISNGDVQRQQSLSGVEVWVQDGQGRSNLENSGGMSSSMDVRSPRGNLPRNQTFGQKLMGNMMDTLLLKNLTFKQKGHAADVLVPTSPTEVPDILEPVPMESEENPILTCIRGKCVTQLLLLGAIDCIQKNHWNRLQPSHKIVIMDILLSILDFAASYNSSAKLRMRMHQIPADRLPVNILRQEIEATRIYLEVLHKSAGQDNLNGEDFRNNISNLDDSSASNVSNHEDIKKGRGEAQRNSRAKASVILCTGFEGHI*

Protein Length: 890

Fln nts: GAAGGGTGGGGCAAAGAGGGGCGTATTCTACACTGCTGAACAGATGGAACTTGTGAGACCTATGCTTGAGGCTGTGGGATGGCCTTTACTCGCGGCATTTTCAGTGACAATGGAGGACAGTGATAATAAACCTAGGGTTCTTCTTTGTATGGAGGGATTTAGACTAGGCATCCATCTTACAAGGGTGCTTGGCATGTATACCATGAGATATGCTTTTTTGACATCACTAGTAAGATTTACATTTCTGCATGCACCAAAGGAGATGCGGAGCAAAAATGTAGAGGCGTTACGGACCTTGCTGATATTGAGCGACACTGAGACTGATGCATTGCAGGATACTTGGAATGCTGTCTTAGAATGTGTTTCAAGGCTTGAGTATATTACATCAACACCATCTATTGCTGCCACGGTTATGCAGGGTTCAAATCAGATATCGAGGGATTCTTTGCTTCAGTCACTAAAAGAACTTACTGGAAAGCCAACTGAACAAGTATTTGTGAATAGTGTAAAGTTACCGAGTGATGCTATTGTGGAGTTTTTCACAGCATTATGTGGTGTCTCTGCTGAGGAACTGAAACAGACACCTGCCCGCGTTTTTAGTCTGCAAAAACTTGTTGAGATAAGTTACTACAACATGGCCCGGATACGCATGGTTTGGGCTAGAATATGGTCAGTTCTCTCACATCACTTTATCTCTGCGGGAAGCCACCATGATGAGAAGATTTCTATGTATGCAATTGACTCGCTAAGACAGCTTGGTATGAAATATTTGGAGAGGGCAGAACTTGCTAAGTTTACCTTTCAGAATGACATCTTGAAACCATTTGTTATCCTCATGCGAAATAGTAGAAGTGCAACTATTCGTACTCTGATTGTTGACTGCATTGTACAGATGATCAAATCGAAGGTTGGGAGCATCAAATCTGGCTGGAGAAGTGTGTTTATGATATTTACAGCTGCTGCTGACGATGAAACAGAATCCATTGCTGAAAGTGCATTTGAGAACGTGGAGCAAGTGGTCTTAGAACACTTTGATCAGGTTGTTGGGGATTGCTTCATGGATTGTGTCAACTGTCTTATTGGATTTGCTAACAATAAAAGCAGTCCACGAATTAGCTTGAAGGCCATTGCTCTGCTTCGTATCTGTGAAGATCGGCTTGCAGAGGGTCTAATTCCAGGTGGGGCCTTGAAACCTGTGGAAGTTATTGGCATAGATGCAGACACTGATGTAACAGAACATTATTGGTTTCCAATGCTTGCGGGATTGTCAGATTTAACCTCTGATCCTCGGACAGAAGTGAGGAATTGTGCACTTGAGGTGCTTTTTGATCTGTTGAAGGAGAGAGGTCACAAATTCTCATCAGCATTCTGGGAAAATGTATTTCATCGTGTATTGTTCCCCATATTTGATCAAGTGAGACATGCAGGAAAGGATGGCAATGTGCATGGTTCTGGGGACCAGTGGCTTCGTGAAACATGTATTCATTCCCTTCAACTGCTTTGTGATCTCTTCAGCAGCTTTTATAAGGAAGTTTCATTTATGCTACCATCACTGCTGGGACTGTTGTTAGATTGTGCTAAAAAGCCAGACCAAGCTGTAGCTTCAATTTCTTGTGGTGCTTTGGTACATCTTATAAAGGTTGGAGGTCACCAATTCAATGATAAGGATTGGGATACTTTATTGACAAGCATTCGCGATGCATCCTACACGACCCAACCCTTAGAACTATTGAACACACAGGGTTTTGATTATACAAGGAAAACTATGAGTATGTCAAGTACCCAAGCCATGAAAGGAGATCGAACTCCATCTACAATTGCTACTGATGGTGCAGGGTCAGATGGAGACACTTATAGCTATGAGAATGGAAACTCATTTGCCAGTACACCACAACGAATTAGTAATGGTGATGTTCAAAGGCAACAGAGTCTGTCTGGTGTGGAAGTGTGGGTTCAAGATGGCCAAGGGAGGTCAAACCTCGAGAATTCTGGAGGCATGTCATCATCAATGGATGTAAGGTCACCAAGAGGAAATCTGCCTAGGAATCAAACCTTTGGACAAAAACTAATGGGAAACATGATGGATACACTTCTGCTTAAAAATCTTACATTTAAGCAAAAGGGACATGCAGCAGATGTTCTAGTTCCAACATCTCCTACTGAGGTACCTGATATTTTAGAGCCAGTGCCCATGGAGAGTGAAGAGAACCCAATATTGACATGTATAAGAGGGAAATGTGTTACTCAACTTCTATTGCTGGGTGCAATTGACTGTATCCAGAAAAACCATTGGAATAGATTACAGCCCTCTCACAAGATAGTTATAATGGATATATTGCTATCTATTCTGGACTTTGCGGCTTCTTACAATTCATCTGCAAAGCTTAGGATGCGAATGCATCAGATTCCAGCTGACAGGTTGCCTGTCAATATTCTACGTCAGGAAATTGAAGCAACACGCATTTATTTGGAAGTATTACATAAAAGCGCTGGGCAGGATAACTTGAATGGTGAAGATTTTAGAAATAATATTTCAAATTTGGATGATTCATCTGCATCTAATGTATCCAATCACGAGGACATTAAAAAAGGAAGAGGGGAAGCTCAGAGAAATAGCAGAGCAAAAGCTAGTGTCATTTTGTGCACAGGTTTTGAAGGACACATCTGA___TCTTCAGCCTGGTCCTGGTGAAGCTGTTGATGCTGATGTTCATCGTGTTCTTGTTTTACGCTCCCCAGTCATTGTTAAGGTGTTGAGTGGTATGTGCATTATGAATAAAAATATCTTCAAGAGACACCTTGGGGAGTTTTTCCCTTCTGTTACAAAACTTGTGTGCAGTGACCAGATGGATGTGCGGCGGGCATTGGGTGACCTCTTTAAGAAACAGCTAATAGGCCTTTTGCCTTGATTTCAACAAATTTGAATAATCTTGTATCCTGGTTTCAGTGCCCATTATTTTTTCATTATTTGGTCATTCTTTGACCTAAGAAGATCTGTAGTCACTCAAAAGGTGTTTTCCATATTTCCAAGATCATTGTTGGCTCTCTAAGATAATGACCACTTGGTTTCATCTCTTAGATGATGATGCAGCCAGTTTACATGTCTAGATAGCATCATCTTGAACCAGTGACATGCATGTCAAGATGGCACTTATCCTTTCAAAAGTTTTGATTACAGCCAATGGTTCTCCATTTATTTCCTTTTGTTATACATCTCTTAAAATTACGGAACTGCAAGATTATGCCTTGTTTTAACTAAAGGGTGAAGAGCGACTCTAGATAATAATTCTTTTATATAAATAGGTTGTGAGGTTCTGCCAACAGAATGGTAGTGCGAATTGTAGTTCCTATGTCTTCCATCCATTACAAGTGTATTGTTCTTATTCTCAATTCGAGGCTCTCCATTTTATTGTAAATAAATTTAGCAGTTCCTGGTCAAATTAACATTCAACTTAAACTTATCTCACTGGTTCTTTTGTGTTTATAAAGGCATATGTTGAAGAAGAGTTAATGTTAATTGTTTGAATAGGTAATCACTTGAGACTCTTCATCGTCAGCTATGTGCTGTTTCCATTTACCTGGAAAT

Fln Alignment:

Contig21809___MLEAVGWPLLAAFSVTMEDSDNKPRVLLCMEGFRLGIHLTRVLGMYTMRYAFLTSLVRFTFLHAPKEMR---------SKNVEALRTLLILSDTETDALQDTWNAVLECVSRLEYITSTPSIAA--------------------------------TVMQGSNQISRDSLLQSL--KELTGKPTEQ-------------------VFVNSVKLPSDAIVEFFTALCGVSAEELKQTPA------RVFSLQKLVEISYYNMARIRMVWARIWSVLSHHFISAGSHHDEKISMYAIDSLRQLGMKYLERAELAKFTFQNDILKPFVILMR---NSRSATIRTLIVDCIVQMIKSKVGSIKS--GWRSVFMIFTAAADDETESIAESAFENVEQVVLEHFDQVVGDCFMDCVNCLIGFANNK-SSPRISLKAIALLRICEDRLAEGLIPGGALKPVEVIGIDADTDVTEHYWFPMLAGLSDLTSDPRTEVRNCALEVLFDLLKE-RGHKFSSAFWENVFHRVLFPIFDQVRH--AGKDGNVHGSGDQWLRETCIHSLQLLCDLFSSFYKEVS
Q42510_______________MFAIMSGPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSSVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASDAADESEHSSEQGQGKPLANSLSSAHLQSMGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIWAAGRPQKGTSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIAT--IAQSTVMPCNLVDKAIFGLLRICQRLLPYKE----SLADELLRSLQLVLKLDARVADAYCEQIAIE-VSRLVKANANHIRSQAGWRTITSLLSITARHPEAS--ESGFDAVSFVMSEGTHLYPAN-YVLCVDAARQFAESRVGQSERSIRALDLMGDSLEFLAKWALSAKENMGEEDFG-KMSQDIGE-MWLRLVQGLRKVCLDQREDVRNHALQSLQKCLGGVDGINLAHSMWSQCFDKVIFTVLDDLLEIAAGSQKDYRN-----MEGTLLLAIKLLSKVFLQQLQELS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
371	12	87			0.992554
372	12			87	0.992554
2592	85		14		0.993533
2594	14		85		0.993533
2649	90		10		0.90298
3256		25		75	0.996473
3265	85		14		0.993533
3266	85			14	0.993533
3269		14	71		0.984337
3271			71	14	0.984337
3272	85			14	0.993533
3273		71	14	14	0.984337
3274			14	85	0.993533
3279	83			16	0.994512
3280		16		83	0.994512
3282	83	16			0.994512
3284	83	16			0.994512
3297	83		16		0.994512
3411	10		90		0.90298
3435	12			87	0.992554
3447		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain