SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21806

Length: 534 nt

UniGene Fasta

>sp_v3.0_unigene21806
CGTTCTAAAAGCGAGAAGATTAGGACGCGCAACCATGGGGACAGTTATGAACCAAAGAATTGTGCAAGGTCTTCATCAATCTTCATCGCATCCATCGCTCAATATCCCGAGCCTCCCAGGGGCAAAGAGTTCGATTTCGAATTCCGGCGTATTCGCAGTAAAGAATTCTCTGTTTGTGGGAGGCCATGCCCCTCGTCAGCTCATGCTCGGCAACACCCTACATCAATCCCACCAAACAAGAGGAAAACATGATTCTGGCAGAAATAAGGCCTTATCTGTCTGGTACAGGGGGAGGTGATCTTGAATTTGTTAAAATTGATGGTCCCGTTGTAAAGGTGAGGATCAGTGGACCTGCAGCTGAAGTTATGACTGTCCGTGTTGCTTTAACTCAGAAGTTACGAGAAAAAATACCTGCAATTGCAGCAGTCCAGCTATTGTAAGCTGGGTTTTCGTCTTAATGTTTCACATGGATAGAAACATCTACGTCTACTATGTATAAATTACTGTTAACTAATGTATTTCATTTTGAGGACT

Ace file of the UniGene sp_v3.0_unigene21806

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01106, NifU, NifU-like domain	-	-	2.0e-07	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Nitrogen fixation protein nifU, putative	-	-	2.452e-08	-

Source	Gene names
Sma3	AT4G25910; At4g25910; At5g49940; CHLREDRAFT_104310; CNFU2; CNFU3; GSVIVT00031337001; GSVIVT00035412001; K9P8.16; LOC_Os11g07920; LOC_Os12g07700; MICPUCDRAFT_8545; MICPUN_84656; MtrDRAFT_AC155282g47v2; NFU2; NFU3; NIFU1; NIFU2; NIFU3; OSTLU_16946; Os06g069

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	chloroplast organization	GO:0009658	Biological Process	-
Sma3	iron-sulfur cluster assembly	GO:0016226	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NIF system FeS cluster assembly, NifU, C-terminal	IPR001075	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25910.1	NFU3, ATCNFU3 NFU domain protein 3 chr4:13164128-13165094 FORWARD LENGTH=236	1.0e-24	75%
RefSeq	Arabidopsis thaliana	NP_567735.1	NifU-like protein 3 [Arabidopsis thaliana]	1.0e-24	75%
RefSeq	Populus trichocarpa	XP_002329667.1	predicted protein [Populus trichocarpa]	2.0e-24	77%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN03

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 136 - 238. Was predicted as Complete, but is very much shorter than de subject

Fln protein: MGTVMNQRIVQGLHQSSSHPSLNIPSLPGAKSSISNSGVFAVKNSLFVGGHAPRQLMLGNTLHQSxxxxxxxxILAEIRPYLSGTGGGDLEFVKIDGPVVKVRISGPAAEVMTVRVALTQKLREKIPAIAAVQLL*

Protein Length: 137

Fln nts: CGTTCTAAAAGCGAGAAGATTAGGACGCGCAACC_-_ATGGGGACAGTTATGAACCAAAGAATTGTGCAAGGTCTTCATCAATCTTCATCGCATCCATCGCTCAATATCCCGAGCCTCCCAGGGGCAAAGAGTTCGATTTCGAATTCCGGCGTATTCGCAGTAAAGAATTCTCTGTTTGTGGGAGGCCATGCCCCTCGTCAGCTCATGCTCGGCAACACCCTACATCAATCCxxxxxxxxxxxxxxxxxxxxxxxxATTCTGGCAGAAATAAGGCCTTATCTGTCTGGTACAGGGGGAGGTGATCTTGAATTTGTTAAAATTGATGGTCCCGTTGTAAAGGTGAGGATCAGTGGACCTGCAGCTGAAGTTATGACTGTCCGTGTTGCTTTAACTCAGAAGTTACGAGAAAAAATACCTGCAATTGCAGCAGTCCAGCTATTGTAA___GCTGGGTTTTCGTCTTAATGTTTCACATGGATAGAAACATCTACGTCTACTATGTATAAATTACTGTTAACTAATGTATTTCATTTTGAGGACT

Fln Alignment:

Contig21806___MGTVMNQRIVQGLHQSSSHPSLNIPSLPGAKSSISNSGVFAVKNSLFVGGHAPRQLMLGNTLHQSHQTRGKHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKQEENMILAEIRPYLSGTGGGDLEFVKIDGPVVKVRISGPAAEVMTVRVALTQKLREKIPAIAAVQLL
A9NN03_______________MQSVISHTIAQSYYHSSSLRSLNTPGLPLAKSSISNPGAFAAKNSLLLGGHAPRHLVLGNTLHQSRQTRGKHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTEENVEKILAEIRPYLSGTGGGDLEFVKIDDPVVKVRISGPAAEVMTVRVALTQKLREKIPAIAAVQLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain