SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21764

Length: 558 nt

UniGene Fasta

>sp_v3.0_unigene21764
CATCCAACTACGTGATCTGGAAGGCTAGGATCTCATGCCTTCTAGATGAGCATAATTTCAAAGCCTATGTCGATAGTGTGGTAGTTGAACCTGCGGATGTGGATCCACTCAAGAAGTACAAGGCTAAAATGGCGAAGGCCAAGCGATTAATCCTCGATGGAGTGAAGGATCACGTTGTATGTCACATTGTTGGCAAAGGAACTGCCAAGGAGATATGGGATGCCTTGGCTACGTTATATCAAGGATCTTTCGAGCAACAAAAGATGTACTTGGAGGTGAAGCTGAGATCAACTAGGATGGAGAAAGGGGAATGCATTGATCTGTTGCTATCAAAGCTTTAGGAAGTCCAAGATCAGTTGGCAACTGTAGGATGAACACCTCAACCTACAGAGATGGTGAGGTTGGCCCTTAATCCAGTCTTAGAAGAATGGAAAGTATTTGTCCAGAGTATCATGGGCAAAGAGAAATTGCTGGATTGGGAAGGGATGTGGGGCGCTCTTCAGCAGGAAGATATGAGGTGAGACTTAGTCAAGTGGAAACTTGATGGCAGCAACAACA

Ace file of the UniGene sp_v3.0_unigene21764

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA	-	-	4.0e-05	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8Y5

Fln msg: No stop codon before M and low homology subject,

Fln protein: MAKAKRLILDGVKDHVVCHIVGKGTAKEIWDALATLYQGSFEQQKMYLEVKLRSTRMEKGECIDLLLSKL*EVQDQLATVG*TPQPTEMVRLALNPVLEEWKVFVQSIMGKEKLLDWEGMWGALQQEDMR*

Protein Length: 132

Fln nts: CATCCAACTACGTGATCTGGAAGGCTAGGATCTCATGCCTTCTAGATGAGCATAATTTCAAAGCCTATGTCGATAGTGTGGTAGTTGAACCTGCGGATGTGGATCCACTCAAGAAGTACAAGGCTAAA_-_ATGGCGAAGGCCAAGCGATTAATCCTCGATGGAGTGAAGGATCACGTTGTATGTCACATTGTTGGCAAAGGAACTGCCAAGGAGATATGGGATGCCTTGGCTACGTTATATCAAGGATCTTTCGAGCAACAAAAGATGTACTTGGAGGTGAAGCTGAGATCAACTAGGATGGAGAAAGGGGAATGCATTGATCTGTTGCTATCAAAGCTTTAGGAAGTCCAAGATCAGTTGGCAACTGTAGGATGAACACCTCAACCTACAGAGATGGTGAGGTTGGCCCTTAATCCAGTCTTAGAAGAATGGAAAGTATTTGTCCAGAGTATCATGGGCAAAGAGAAATTGCTGGATTGGGAAGGGATGTGGGGCGCTCTTCAGCAGGAAGATATGAGGTGAGACTTAGTCAAGTGGAAACTTGATGGCAGCAACAACA

Fln Alignment:

Contig21764___LILDGVKDHVVCHIVGKGTAKEIWDALATLYQGSFEQQKMYLEVKLRSTRMEKGECIDLLLSKL*EVQDQLATVG*TPQPTEMVRLALNPVLEEWKVFVQSIMGKEKLLDWEGMWGALQQEDMR
D5A8Y5_______________IIVDSIKDHLIPYISHFDSSKKMYDALTNLLSVRNIGLVMSLKNEPRDMKMNEDDIITSYFVRISQLRDQLQAIEEIISEKELVNIVLNGLPKTWDAFAASMNTRKEYLTFEELWTCCAQEESR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
426			66	33	0.997452
444		66		33	0.997452
453	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain