SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21652

Length: 571 nt

UniGene Fasta

>sp_v3.0_unigene21652
CGTCGTGACCTTGGCTGTCACTCAAGCTTGCATCCCTCACTCAGGACTCCTGCTTTTGGGCACAAGTAGAAGAGGCTTTGTGAGCTTTGCTGTCACTGGAACAGGGGCAGCACCAAAAGCTAGAGAGTCTTGAAATGTTTGAAGGTTATGCGATAAAAATATTTGATGATCGCAATATTTCCTCGGATGTTTTCTTGGAAGGAAGCAGCTTCATGGAGTGGTGGAATGAGTGGAAAGAATACAAGCAAAATCGATTCCCAGAGTGGAGATCTCCTCTGTGTGAAATAATGGAAACGGAAGGTTGTAAGGCCTGATCCTAGCTTACTACAGCAAGCTCCTTTTGGACTCATGTTTTCTTGTTCGAGGCTCTTGTTGATACAGCACATTTAATCTATTTTGATTGACTGCTTCCCTTTTGCTTTCTCATGAGGCGTTATATGTGTTTTATTTTTTTCAAGCTAACATGCTGTCTGATCTTTGATGATAGTATATGGACTATGGTTCTCTTGACTTTCATGTATTTCGATTTTTATATTCTCTTAATATAATCCATGATGATTTTCTCTCTTAG

Ace file of the UniGene sp_v3.0_unigene21652

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Putative uncharacterized protein	-	-	2.176e-06	-

Source	GOs	Term	Type	e value	Identity
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLY7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 104 - 617

Fln protein: S*PWLSLKLASLTQDSCFWAQVEEAL*ALLSLEQGQHQKLESLEMFEGYAIKIFDDRNISSDVFLEGSSFMEWWNEWKEYKQNRFPEWRSPLCEIMETEGCKA*

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCTTGCATCCCTCACTCAGGACTCCTGCTTTTGGGCACAAGTAGAAGAGGCTTTGTGAGCTTTGCTGTCACTGGAACAGGGGCAGCACCAAAAGCTAGAGAGTCTTGAAATGTTTGAAGGTTATGCGATAAAAATATTTGATGATCGCAATATTTCCTCGGATGTTTTCTTGGAAGGAAGCAGCTTCATGGAGTGGTGGAATGAGTGGAAAGAATACAAGCAAAATCGATTCCCAGAGTGGAGATCTCCTCTGTGTGAAATAATGGAAACGGAAGGTTGTAAGGCCTGA___TCCTAGCTTACTACAGCAAGCTCCTTTTGGACTCATGTTTTCTTGTTCGAGGCTCTTGTTGATACAGCACATTTAATCTATTTTGATTGACTGCTTCCCTTTTGCTTTCTCATGAGGCGTTATATGTGTTTTATTTTTTTCAAGCTAACATGCTGTCTGATCTTTGATGATAGTATATGGACTATGGTTCTCTTGACTTTCATGTATTTCGATTTTTATATTCTCTTAATATAATCCATGATGATTTTCTCTCTTAG

Fln Alignment:

Contig21652___KLASLTQDSCFWXXXXXXXXXXXXXXXXXHQKLESLEMFEGYAIKIFDDRNISSDVFLEGSSFMEWWNEWKEYKQNRFPEWRSPLCEIMETEGCK
B8LLY7_______________KLASLTQDSCFWAHLEEALKELESLKQDQHQKLESLEMFEGYVTRKINDRSVSSDVFLEGSSFMEWWKEWKEYKQNQFPEWSSTLYEIMEGESWK

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
114	66		33		0.997452
115		66		33	0.997452
117	66		33		0.997452
118	66			33	0.997452
119	66		33		0.997452
121		33	66		0.997452
124	66			33	0.997452
126	66		33		0.997452
127		33	66		0.997452
128	66			33	0.997452
133		33		66	0.997452
135		33	66		0.997452
158	50	50			1.0
159	50		50		1.0
160	50			50	1.0
161	50		50		1.0
163		50		50	1.0
164	50	50			1.0
165	50			50	1.0
167		14	42	42	1.0
168	42		57		1.0
169	42	42		14	1.0
170		14		85	0.993533
173	42	42	14		1.0
174	57			42	1.0
176		14	42	42	1.0
177		85		14	0.993533
178	57			14	1.0
179	85		14		0.993533
180			14	85	0.993533
181	85	14			0.993533
183			14	85	0.993533
214			12	87	0.992554
217	87		12		0.992554
220		12	87		0.992554
221	87	12			0.992554
222			87	12	0.992554
227			87	12	0.992554
228		12	87		0.992554
230	87	12			0.992554
232		12	87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain