SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21502

Length: 792 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene21502 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	proteophosphoglycan ppg4 [Leishmania braziliensis MHOM/BR/75/M2904] emb\|CAM43270.1\| proteophosphoglycan ppg4 [Leishmania braziliensis MHOM/BR/75/M2904]	-	-	2.0e-09	27%
FL-Next	sp=Putative membrane protein ycf1; Cucumis sativus (Cucumber). Plastid; Chloroplast.	-	-	0.0	37%
Sma3	Extensin	-	-	2.226e-24	-

Source	Gene names
Sma3	APTR-1; AT4G38770; AT4g13340; AT4g15160; AT4g33970; AT4g38770; At1g12040; At1g23720; At1g26250; At1g54970; At1g76930; At2g15880; At2g27380; At3g17050; At3g19020; At3g22120; At3g62680; At4g01985; At4g13340; At4g33970; At4g38770; At5g59170; CWLP; ENOD2; ENO

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	extracellular space	GO:0005615	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	outer membrane	GO:0019867	Cellular Component	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hedgehog receptor activity	GO:0008158	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	lipase activity	GO:0016298	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	cell morphogenesis involved in differentiation	GO:0000904	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	lipid transport	GO:0006869	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	plant-type cell wall modification	GO:0009827	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	nodulation	GO:0009877	Biological Process	-
Sma3	trichoblast differentiation	GO:0010054	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	ROK	IPR000600	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Flavodoxin, conserved site	IPR001226	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Adhesive plaque protein	IPR002964	-	-
Sma3		IPR003267	-	-
Sma3	Patched	IPR003392	-	-
Sma3		IPR003612	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Pollen Ole e 1 allergen/extensin	IPR006041	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Extensin repeat	IPR006706	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Peptidase M11, gametolysin	IPR008752	-	-
Sma3	Root cap	IPR009646	-	-
Sma3		IPR010616	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Peptidase M10B, serralysin, C-terminal	IPR013858	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Atrophin-1	IPR017993	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
400		14	85		0.993533
401		85	14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain