SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21441

Length: 1803 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21441

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Actin-11 n=180 Tax=Spermatophyta RepID=ACT11_ARATH	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin, conserved site	IPR004001	-	0.0	-
Sma3	Actin-like	IPR004000	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12110.1	ACT11 actin-11 chr3:3858116-3859609 FORWARD LENGTH=377	96%
RefSeq	Arabidopsis thaliana	NP_187818.1	actin-11 [Arabidopsis thaliana]	96%
RefSeq	Populus trichocarpa	XP_002322664.1	actin 7 [Populus trichocarpa]	97%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNW2

Fln msg:

Fln protein: MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*

Protein Length: 379

Fln nts: ATGGGGCTCTCAGTGTAAGCATAGCATTTCATTTCTCGGTGAAGGAAAGGAAAGGAAAGAAGGAAAGAGCTCAGACGACGGGCACTGCACGCCGTCAATTTTCGTCTCTATTTCGCGTTTGCAGTTATCTCGCAATTTAATTGAAG_-_ATGGCTGACGCAGAGGATATCCAGCCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCCAGGGCAGTGTTTCCAAGTATTGTTGGTCGCCCTCGTCATACTGGAGTCATGGTGGGGATGGGGCAGAAGGATGCATATGTAGGTGATGAGGCTCAATCTAAAAGAGGTATTCTTACTTTGAAGTATCCTATTGAGCATGGGATAGTCACCAACTGGGATGATATGGAGAAGATTTGGCATCATACCTTTTACAATGAGTTACGAGTTGCTCCAGAAGAACACCCTATTCTCCTCACCGAAGCACCTTTGAATCCCAAGGCAAACAGAGAGAAGATGACTCAGATTATGTTTGAGACATTCAATACACCTGCAATGTATGTTGCCATTCAAGCTGTTCTTTCTCTTTATGCAAGTGGTCGAACAACTGGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTTCCCATATATGAAGGATATGCTCTTCCACATGCTATTCTCAGGCTAGATCTTGCTGGTCGGGATCTGACTGATGCTTTGATGAAGATCCTGACTGAAAGAGGTTATTCATTCACCACTACGGCAGAACGTGAAATTGTTCGTGATATGAAAGAGAAACTTGCTTATGTAGCCCTTGACTACGAGCAGGAGCTTGAGACAGCCAAGACGAGTTCCTCCCTGGAAAAGAGTTACGAGCTTCCTGATGGGCAAGTAATCACCATTGGTGCAGAGCGTTTCAGATGCCCCGAGGTCTTGTTCCAACCTTCGCTAATTGGAATGGAAGCTGCTGGCATTCATGAGACAACATACAATTCCATCATGAAGTGCGACGTGGATATCAGAAAGGATCTGTATGGAAATATTGTTCTCAGTGGAGGATCTACCATGTTTCCTGGTATTGCCGATCGTATGAGCAGGGAGATTACTGCCCTGGCCCCAAGTAGTATGAAGATCAAGGTGGTTGCACCTCCTGAAAGGAAGTACAGTGTCTGGATCGGAGGATCAATCTTGGCATCTCTGAGTACATTCCAACAGATGTGGATTGCCAAGGCTGAGTATGATGAATCTGGTCCGTCAATTGTTCACAGAAAGTGTTTCTAA___TTTTCAGTGGCTTAGTAGTTTTTAGAGTTCCCAAGCAGTATTGCAGTTATTATGAAGTTGAGTAGGTGATCACGGGTATATTATATTCAGCTATTTCGATGCAGTTAGAGTATATAGTCTTGTCATGGTAGAGATGATAGAGGTACATTTTTGCATGGTTGCGTCCTTGTTTGTTGAATGGCAAGATTTTAGCCCGAAATCTGTCGCCCATTTTTTATTTATTTTGTACTGTGTAATAGTGTGCATGGAGGATGCATATTTTGAATCTCTCCAATGTCATAGTGCATGAGAAACTGGCGGTCTTACAGATCATAATGTACTGCTCAATCACCTATTATTATTTTATGGTTTCATGTTTGAATCTATTTTCAACTGTGCGGTTAATAGCGTGCTATGGAAGATGCATACTCTGAAACACTCCAATGTCATAGTGCATGAGAAACGGACGGTCTTACAGTTCATAATGTACTGCTCAATCACCTATTATTATTTTATGGTTTCATGTTTGAATCTATTTTGAACT

Fln Alignment:

Contig21441___MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
B8LNW2_______________MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYDESGPSIVHRKCF

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
9	33	66			0.997452
11		66	33		0.997452
12	85		14		0.993533
17	88		11		0.923564
62	11		88		0.923564
66	88		11		0.923564
69	11		88		0.923564
104			75	25	1.0
110	75		25		1.0
122		75		25	1.0
131		50		50	1.0
359		70		29	1.0
543	10		90		0.90298
1383	97		2		0.964186
1396	97			2	0.966038
1512			12	87	1.0
1577	54		44		1.0
1589	44			54	1.0
1590	2			97	0.956062
1621		5		90	0.999542
1622	5			94	0.999993
1641	92		7		0.999532
1643		90		10	0.999898
1644		16		83	1.0
1646	25			75	1.0
1649		12		87	0.992554
1650	14	42	42		1.0
1651	83			16	0.994512
1652	83			16	0.994512
1653		83		16	0.994512
1657	16		83		0.994512
1659		20	60	20	0.99255

SSRs (tot: 1)

Start position	End position	Sequence	Length
42	59	AAGGA AAGGA AAGGA AAG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain