SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21427

Length: 2420 nt

UniGene Fasta

>sp_v3.0_unigene21427
GTATTTTTGTATGAACCGTCGGATTCGAGATCGGACGGCGATCCGAAACTGCAAGCGTCGGCCGTCGGATGCAGCATCGGACGGCAAAGAAGGAACCCTAAAACGCATTGCAACGTGCTTGGTGGGTGGAGGTTCTATGACCAGTATATGTTGATAACAAGGGAGGGGAAGTAGTCCTCTTCATCTTGTGCGAGTCTCTCTGCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATCATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAACGTGAACGTGGTATCACAATTGATATTGCACTGTGGAAGTTTGAGACAACTAAATACTACTGCACTGTGATTGATGCCCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGAACATCTCAGGCTGACTGTGCAGTTTTGATCATCGACTCCACCACTGGAGGTTTTGAAGCTGGTATTTCCAAGGACGGTCAGACGAGAGAACATGCCCTATTGGCGTTCACCTTGGGAGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACTACTCCCAAGTACTCTAAGGCTCGTTATGATGAAATTGTTAAGGAAGTATCTTCTTATTTGAAGAGGGTTGGATACAACCCGGACAAGATTCCTTTTGTGCCCATCTCTGGTTTTGAGGGTGACAATATGATTGAGCGTTCTACCAACCTTGATTGGTACAAGGGTCCAACACTCTTGGAAGCTCTGGACCAGGTTTCAGAGCCAAAGCGTCCTTCAGACAAGCCTCTGAGGTTGCCTCTTCAGGATGTTTACAAGATTGGTGGTATTGGGACTGTGCCTGTTGGTCGTGTGGAAACTGGAGTCATAAAACCAGGTACGATTGTTACCTTTGGTCCCACTGGTCTGACAACTGAAGTTAAGTCTGTTGAAATGCATCATGAAGCTCTTCAGGAGGCATTGCCTGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTGGCATCTGATTCCAAGAATGATCCAGCAAAGGAAGCTGCCAACTTTACCGCACAGGTTATTATTATGAATCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTGTTGGATTGTCACACTTGCCACATTGCCGTCAAGTTTGCTGAGATCATGACCAAGGTTGACAGGCGTTCTGGCAAGGAGCTGGAGAAGGAGCCCAAGTTTCTTAAGAATGGAGATGCTGGATTTGTTAAGATGATTCCAACCAAACCCATGGTTGTCGAAACTTTTGCAGAGTATCCTCCATTGGGTCGTTTTGCAGTCAGGGACATGCGTCAGACGGTTGCTGTAGGAGTCATCAAAGCTGTTGAAAAGAAGGAACCTAGTGGTGCAAAGGTTACCAAGGCAGCAGCCAAAAAGAAGTGAATGTTCCAGCAAAGTGATTGGGAATGGAGGATTGCGTGCTGCATTTCGTGTGCTTCCATGCTTATGCTTCACTATTTTCCCGATAGTATGTTAGTAGAGTTAGTTTTCCAAATGCAGAATTGGGTTCTTGATCGGCGGTGGCATAGGTTACATTATTTTCTAGTAAATACTTTTTAATGGTTACATTAGGCTAAAGTTGATTTAAGATTTCGTAGTTGCGGGGAAATCATGAGTTTGTCTGCACTGCAAGGAAATCTATGCAGTTGGATTGAGGGAGGATGGGCATTAATAATTTCTATTACTGGTTTACTGGTTTATTTTTAATGTTTGTATTGCCGTCCGTACATGACATTTTTCTCCGGATTGAGAAGACTTGGAATTTATATTAAAGCGCAGTTTTGAGGAGAAAATGTTTTTCTAATACTTTTAGATTGCTCGATGTTTTGTAGATCTATATTCTAGGCTCTGCGTTTTTACTTGCAATTGAATATCCGAAAAGTCCCTTGGTTGAGAATATGAAACTAGTCAGTCTCTACGCCAGGCACACTAGAAACCTTGGTTGTTGCTGGATGCGTGATATAGTTTGGCTTTTGGAGTTATGCTAGCTGTAAATGATTTTTTGTCGGGCGCTTTGTTAATCCTCCCTCTAGTCACTGTTTTCAGGAGTGACAAGAAAATACTATTGTTTTTGTTCTACTATACGTTTGTCTTAGAAGGAGCTCCTGGTTTTGCCTGCTATAATTTAAGATGTCAGAAGTGGTTTTGATATTTGGTGTTTAGATTTGTGA

Ace file of the UniGene sp_v3.0_unigene21427

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 1-alpha n=193 Tax=Eukaryota RepID=EF1A_ARATH	-	-	93%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Elongation factor 1-alpha	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60390.1	GTP binding Elongation factor Tu family protein chr5:24289226-24290675 FORWARD LENGTH=449	93%
RefSeq	Arabidopsis thaliana	NP_001030993.1	Elongation factor 1-alpha [Arabidopsis thaliana]	93%
RefSeq	Populus trichocarpa	XP_002326338.1	predicted protein [Populus trichocarpa]	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWR1

Fln msg:

Fln protein: MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKRVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVSEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGTIVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEIMTKVDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSGAKVTKAAAKKK*

Protein Length: 449

Fln nts: GTATTTTTGTATGAACCGTCGGATTCGAGATCGGACGGCGATCCGAAACTGCAAGCGTCGGCCGTCGGATGCAGCATCGGACGGCAAAGAAGGAACCCTAAAACGCATTGCAACGTGCTTGGTGGGTGGAGGTTCTATGACCAGTATATGTTGATAACAAGGGAGGGGAAGTAGTCCTCTTCATCTTGTGCGAGTCTCTCTGCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATC_-_ATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAACGTGAACGTGGTATCACAATTGATATTGCACTGTGGAAGTTTGAGACAACTAAATACTACTGCACTGTGATTGATGCCCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGAACATCTCAGGCTGACTGTGCAGTTTTGATCATCGACTCCACCACTGGAGGTTTTGAAGCTGGTATTTCCAAGGACGGTCAGACGAGAGAACATGCCCTATTGGCGTTCACCTTGGGAGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACTACTCCCAAGTACTCTAAGGCTCGTTATGATGAAATTGTTAAGGAAGTATCTTCTTATTTGAAGAGGGTTGGATACAACCCGGACAAGATTCCTTTTGTGCCCATCTCTGGTTTTGAGGGTGACAATATGATTGAGCGTTCTACCAACCTTGATTGGTACAAGGGTCCAACACTCTTGGAAGCTCTGGACCAGGTTTCAGAGCCAAAGCGTCCTTCAGACAAGCCTCTGAGGTTGCCTCTTCAGGATGTTTACAAGATTGGTGGTATTGGGACTGTGCCTGTTGGTCGTGTGGAAACTGGAGTCATAAAACCAGGTACGATTGTTACCTTTGGTCCCACTGGTCTGACAACTGAAGTTAAGTCTGTTGAAATGCATCATGAAGCTCTTCAGGAGGCATTGCCTGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTGGCATCTGATTCCAAGAATGATCCAGCAAAGGAAGCTGCCAACTTTACCGCACAGGTTATTATTATGAATCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTGTTGGATTGTCACACTTGCCACATTGCCGTCAAGTTTGCTGAGATCATGACCAAGGTTGACAGGCGTTCTGGCAAGGAGCTGGAGAAGGAGCCCAAGTTTCTTAAGAATGGAGATGCTGGATTTGTTAAGATGATTCCAACCAAACCCATGGTTGTCGAAACTTTTGCAGAGTATCCTCCATTGGGTCGTTTTGCAGTCAGGGACATGCGTCAGACGGTTGCTGTAGGAGTCATCAAAGCTGTTGAAAAGAAGGAACCTAGTGGTGCAAAGGTTACCAAGGCAGCAGCCAAAAAGAAGTGA___ATGTTCCAGCAAAGTGATTGGGAATGGAGGATTGCGTGCTGCATTTCGTGTGCTTCCATGCTTATGCTTCACTATTTTCCCGATAGTATGTTAGTAGAGTTAGTTTTCCAAATGCAGAATTGGGTTCTTGATCGGCGGTGGCATAGGTTACATTATTTTCTAGTAAATACTTTTTAATGGTTACATTAGGCTAAAGTTGATTTAAGATTTCGTAGTTGCGGGGAAATCATGAGTTTGTCTGCACTGCAAGGAAATCTATGCAGTTGGATTGAGGGAGGATGGGCATTAATAATTTCTATTACTGGTTTACTGGTTTATTTTTAATGTTTGTATTGCCGTCCGTACATGACATTTTTCTCCGGATTGAGAAGACTTGGAATTTATATTAAAGCGCAGTTTTGAGGAGAAAATGTTTTTCTAATACTTTTAGATTGCTCGATGTTTTGTAGATCTATATTCTAGGCTCTGCGTTTTTACTTGCAATTGAATATCCGAAAAGTCCCTTGGTTGAGAATATGAAACTAGTCAGTCTCTACGCCAGGCACACTAGAAACCTTGGTTGTTGCTGGATGCGTGATATAGTTTGGCTTTTGGAGTTATGCTAGCTGTAAATGATTTTTTGTCGGGCGCTTTGTTAATCCTCCCTCTAGTCACTGTTTTCAGGAGTGACAAGAAAATACTATTGTTTTTGTTCTACTATACGTTTGTCTTAGAAGGAGCTCCTGGTTTTGCCTGCTATAATTTAAGATGTCAGAAGTGGTTTTGATATTTGGTGTTTAGATTTGTGA

Fln Alignment:

Contig21427___MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKRVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVSEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGTIVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEIMTKVDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSG
A9NWR1_______________MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETNKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKRVGYNPDKIPFVPISGFEGDNMIERSNNLDWYKGPTLLEALDQVSEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGTIVTFGPTGLTTEVKSVEMHHEALQEAYPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFSEIMTKVDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTG

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
654		25		75	0.996473
655	25			75	0.996473
1167		1		98	1.0
1177	1		98		0.998575
1178		1	98		0.976054
1181	1			98	0.999994
1184	98			1	0.999995
1185	2	0		97	1.0
1194		1		98	0.933636
1209		1		98	0.960341
1473		94		5	0.997984
1723		2		97	0.910981
1785		2		97	0.998932
1789		1		95	0.998662
1913	1		98		0.99732
2067		90		6	0.996531
2138	36		63		1.0
2368		25	75		0.996473
2386	33		33	33	0.997753
2387	33		33	33	0.997753
2389	66	33			0.997452
2391		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain