SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21405

Length: 1199 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene21405 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue n=2 Tax=Hordeum vulgare RepID=Q84KC6_HORVU	-	-	3.0e-40	31%
FL-Next	sp=Receptor-like protein kinase HSL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	27%
Sma3	NBS	-	-	3.899e-06	-

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SGP2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 487 aas, your sequence is shorter than subject: 392 - 996

Fln protein: GRLSNLHSLDLSGCNKLERLPDSFGSLSNLHSLKLPRLKRLPDSFGSLSNLHSLDLSRWRNKLKRLPDSFGSLTNLHSLEPYRYHKLERLPDSFGSLTNLTSITLSWCSKLERLPDSFGSLPSLVYFSAWHCANLTISSETFGNIRTLEHIDLSGCEKVEVWPTQLAHQRSLKTLRLTGTNLKEELPSVIELPSDLEVLWIANPLLDTVMPSLGGLLKLKDLRLEYRREVKCLPASLERPSQLRWLKVAACPIIHTSEVLSDEVVYPNLSELILEECINVVEVGTLPKALRYVRLDRCYNLRSIQGLCGLPMLQYLHIVKCNELQELPSVKTLKILHVVDCEKLNSIRDLAHQTELYWLHVRGCPELEKLEGVEYCTSLCDFSVEGCHKLR*

Protein Length: 393

Fln nts: GGCAGATTGTCGAACCTCCACAGCCTGGACCTGTCTGGGTGCAACAAATTGGAGAGGCTGCCAGATTCTTTCGGCAGCTTGTCGAACCTCCACAGCTTGAAACTGCCTCGCTTGAAGAGGCTGCCAGATTCTTTCGGCAGCTTGTCGAACCTCCACAGCTTGGACCTGTCTCGGTGGCGCAACAAATTGAAGAGGCTGCCAGATTCTTTCGGCAGCTTGACGAACCTCCACAGCTTGGAACCGTATCGGTACCACAAATTGGAGAGGCTGCCAGATTCCTTCGGCAGCTTGACGAACCTCACCAGCATAACCCTGTCGTGGTGCAGCAAATTGGAGAGGCTGCCAGATTCTTTCGGGAGTTTACCTAGCCTTGTATATTTTAGTGCTTGGCATTGTGCTAATTTAACAATCTCAAGCGAAACATTTGGAAATATAAGAACACTGGAGCATATAGATCTTTCCGGGTGTGAAAAAGTTGAAGTCTGGCCCACGCAACTGGCCCATCAAAGGTCCCTGAAAACACTGAGGTTGACGGGCACAAATTTGAAGGAAGAATTGCCAAGTGTGATTGAACTCCCCAGTGATTTAGAAGTTCTGTGGATAGCAAACCCTTTGCTGGACACAGTGATGCCTTCGCTGGGGGGCTTACTGAAGTTGAAGGATTTGCGTCTCGAGTATAGGCGGGAAGTGAAGTGTTTGCCGGCATCGCTTGAACGGCCGAGTCAGTTGAGATGGTTGAAAGTGGCTGCTTGTCCCATAATCCACACATCAGAGGTATTATCTGATGAAGTTGTATACCCCAACCTTTCAGAGTTAATTTTAGAGGAGTGTATTAATGTGGTGGAGGTTGGAACATTACCAAAGGCACTCAGATATGTCAGATTGGATAGGTGCTACAATCTGAGAAGTATACAAGGCCTTTGTGGTCTTCCAATGCTTCAATACCTACACATTGTAAAGTGTAACGAACTTCAGGAGCTGCCGAGCGTTAAAACATTGAAGATCTTGCATGTAGTAGATTGTGAGAAGTTGAATAGCATACGGGATTTGGCGCACCAAACAGAGCTTTATTGGCTACATGTTCGGGGGTGCCCTGAGTTGGAGAAGCTGGAGGGAGTTGAATATTGTACATCGTTATGTGATTTTTCTGTCGAGGGGTGTCATAAATTGCGGTAGAGAGGCTGCGCCAGAAATGTTAC

Fln Alignment:

Contig21405___LSNLHSLDLSGCNKLERLPDSFGSLSNLHSLKLPRLK---RLPDSFGSLSNLHSLDLSRWRNKLKRLPDSFGSLTNLHSLEPYRYHKLERLPDSFGSLTNLTSITLSWCSKLERLPDSFGSLPSLVYFSAWHCANLTISSETFGNIRTLEHIDLSGCEKVEVWPTQLAHQRSLKTLRLTGTNLKEELPSVIELPSDLEVLWIANPLLDTVMPSXXXXXXXXXXXLEYRREVKCLPASLERPSQLRWLKVAACPIIHTSEVLSDEVVYPNLSELILEECINVVEVGTLPKAL----RYVRLDRCYNLRS---IQGLCGLPMLQYLHIV
Q9SGP2_______________IPTLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSYNPFSPSRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLALNDLVGHIPPSLGGLTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQLTGKIPDELC-RVPLESLNLYENNLEGELPASIALSPNLYEIRIFG-----------------------NRLTGGLPKDLGLNSPLRWLDVSENEF--SGDLPADLCAKGELEELLI---IHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFWGLPHVNLLELV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1012		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain