SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21401

Length: 478 nt

UniGene Fasta

>sp_v3.0_unigene21401
ATGGGGCCAGAGCTCCCGACTTCAGTTTCAGCCTTGTTATATCTGAGATTTGTGGAAGTAGCCAGCCAATAAGAAAAATATTTTATCCTTCTAAGATCTGAGACATGGATATGAAGAAAGCAATACACGCGTGCATTCTTCTGGTTATGGTGTTCGGATTGTTGAATCTGCTTAATGCTCCAAACCGCGCTAAATTTGTGATGTTCATTTAGTTTTCCTCTTGTTCAGAGTAGTTTGCAGTGTGGAGGATGAGATCAACGGATTTTCACTCGGTCAGCCTCAGACATTAAATAAGGACCGTCATCTGCTTGCAATAAACTGCGGCAATGCTTGCGGGAAGCGATGTGCATTGGCATCGGTAAAGGACAGGTGCTTGAAGTACTGCCGGATCTGCTGCAGCTCGTGCCAGTGCGTTCCCCCAGGGACATATGGCAACAAGAACGCGTGTCCTTGCTATCGGGATATGAAGAATGCCAAG

Ace file of the UniGene sp_v3.0_unigene21401

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GAST1 protein, putative n=1 Tax=Ricinus communis RepID=B9R733_RICCO	-	-	8.0e-19	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	GAST1 protein, putative	-	-	8.339e-09	-

Source	Gene names
Sma3	At2g14900; At5g59845; At5g59845/MMN10.7; GASR1; GIR1; GSVIVT00007725001; GSVIVT00019618001; LOC_Os03g55290; MtrDRAFT_AC158501g15v2; OSJNBb0048A17.7; Os03g0760800; OsI_13625; OsJ_12674; POPTRDRAFT_549969; POPTRDRAFT_592034; POPTRDRAFT_649651; RCOM_0810460;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59845.1	Gibberellin-regulated family protein chr5:24111443-24111808 FORWARD LENGTH=89	6.0e-23	66%
RefSeq	Arabidopsis thaliana	NP_568914.1	gibberellin-regulated protein [Arabidopsis thaliana]	8.0e-23	66%
RefSeq	Populus trichocarpa	XP_002327192.1	predicted protein [Populus trichocarpa]	5.0e-25	67%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP73

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 95 - 111

Fln protein: ICDVHLVFLLFRVVCSVEDEINGFSLGQPQTLNKDRHLLAINCGNACGKRCALASVKDRCLKYCRICCSSCQCVPPGTYGNKNACPCYRDMKNAK

Protein Length: 96

Fln nts: ATGGGGCCAGAGCTCCCGACTTCAGTTTCAGCCTTGTTATATCTGAGATTTGTGGAAGTAGCCAGCCAATAAGAAAAATATTTTATCCTTCTAAGATCTGAGACATGGATATGAAGAAAGCAATACACGCGTGCATTCTTCTGGTTATGGTGTTCGGATTGTTGAATCTGCTTAATGCTCCAAACCGCGCTAAATTTGTGATGTTCATTTAGTTTTCCTCTTGTTCAGAGTAGTTTGCAGTGTGGAGGATGAGATCAACGGATTTTCACTCGGTCAGCCTCAGACATTAAATAAGGACCGTCATCTGCTTGCAATAAACTGCGGCAATGCTTGCGGGAAGCGATGTGCATTGGCATCGGTAAAGGACAGGTGCTTGAAGTACTGCCGGATCTGCTGCAGCTCGTGCCAGTGCGTTCCCCCAGGGACATATGGCAACAAGAACGCGTGTCCTTGCTATCGGGATATGAAGAATGCCAAG

Fln Alignment:

Contig21401___VHLVFLLFRVVCSVEDEINGFSLGQPQTLNKDRHLLAINCGNACGKRCALASVKDRCLKYCRICCSSCQCVPPGTYGNKNACPCYRDMKNAK
A9NP73_______________VMLFGLLNLVVCSVEDEINGFSLGQPQTLHKDRHLLALNCGSACGKRCALASVKDRCLKYCGICCSSCQCVPPGTYGNKNACPCYRDMKNAK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
98	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain