SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21357

Length: 1302 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21357

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Biotin carboxylase carrier protein n=1 Tax=Solanum lycopersicum RepID=Q84T86_SOLLC	-	-	5.0e-09	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	Gene names
Sma3	GSVIVT00002259001; LOC_Os03g61990; OSJNBa0096I06.8; Os03g0836200; OsI_14220; OsJ_13272; POPTRDRAFT_665593; RCOM_1375720;

Source	GOs	Term	Type	Identity
Sma3	acetyl-CoA carboxylase complex	GO:0009317	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	acetyl-CoA carboxylase activity	GO:0003989	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	biotin binding	GO:0009374	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Acetyl-CoA biotin carboxyl carrier	IPR001249	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0L3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 36 aas, putative chimeric sequence, your sequence is shorter than subject: 274 - 309

Fln protein: MATVPTASATAPMLVEANSGNSSGVLSSPASQQHHVRVSNARARSRGSVLASSFSGTHLDRPFAGQFERYRGSRSALWKSTVNEQVAVHGSSNAAAIPAAQSLEVKAAGDNGDKPAEESSASSSAPSTMTGSAISAFMSEVADLIKLVDSRDIMELQLKQQDCEIQSALNVVNVVILPGNALMEMDIVGVEVIDMEAEVIVMEVVVGVVNMVLIAMVVVVIGMEDAVGMEEAVVVKMIATIVTVLVHMTVQVVAGVLMMIVIEVVVLVAVMPQ*

Protein Length: 275

Fln nts: CGTCGTGACCTTGGCTGTGACTGAAAATTTACTGTCCTGTTCAGCACCAGGGTGCATTCCTTCGCTCTGGATGTGTGCCTGATCACAGGTTCGAGTCTCAACAAACTTGAAGAATCTTGAATTCCTGCAGAACACTC_-_ATGGCGACTGTTCCCACAGCGTCTGCGACTGCGCCTATGTTAGTAGAAGCAAACAGCGGCAATAGCAGTGGAGTATTAAGTTCTCCGGCCAGTCAGCAGCATCACGTTAGGGTTTCAAATGCCAGGGCCCGCTCACGGGGTTCGGTCTTGGCTTCGAGCTTCTCGGGAACTCACCTCGATCGGCCTTTTGCTGGACAGTTCGAGCGATATCGGGGTTCTCGGTCAGCTTTGTGGAAGTCAACTGTGAACGAGCAGGTTGCAGTCCATGGATCCTCTAATGCTGCAGCAATTCCTGCTGCTCAAAGTTTGGAAGTCAAGGCGGCTGGGGACAATGGGGACAAGCCTGCTGAGGAGTCTTCAGCTTCATCTTCAGCGCCTTCCACAATGACGGGTTCGGCTATTTCTGCATTTATGAGTGAAGTCGCTGATTTGATCAAGCTTGTGGATTCTCGGGATATTATGGAATTGCAGCTGAAACAACAGGATTGTGAAATTCAGAGTGCTTTAAATGTGGTCAACGTGGTCATTTTGCCAGGGAATGCCCTAATGGAGATGGATATCGTGGGGGTGGAGGTGATAGATATGGAAGCAGAAGTGATCGTTATGGAGGTGGTAGTAGGAGTAGTAAATATGGTTCTGATCGCAATGGTGGTGGTGGTGATCGGTATGGAGGACGCAGTCGGGATGGAGGAAGCCGTAGTGGTAAAGATGATCGCTACAATCGTGACCGTTCTGGTCCATATGACCGTCCAAGTGGTGGCGGGCGTTCTTATGATGATCGTGATTGAGGTGGTTGTTTTGGTGGCTGTGATGCCTCAGTAA___AGAAATTTTGAAGCTGTGTTGAATATGAAAAGTGGTATAGGGATCACTGTGAAATTCACGTATCACTGGCCAAGTGTTTCTGTTGTCTATGACATTGTGTAATTGCTTTAGTAATTGTACACACTTGAATGCCAGGATTAGGCTGAACCTTGGGATATTTTATTTTCTATCGTTTCAAGATTCTTCTAAGTTGGAATGTTTGAGAGGCACTGTGCTACTTTCATTGTTTTACAGTAGTTTTTTAGTATTCATTGGCTTTCTTGAGTTGGAATGTTATGGACAACGATGAGAAACTATGTTTTGAAGGTAATGGTCATGGCCTAGTGGAGTAAAGTTATTTCTG

Fln Alignment:

Contig21357___MATVPTASATAPMLVEANSGNSSGVLSSPASQQHHVRVSNARARSRGSVLASSFSGTHLDRPFAGQFERYRGSRSALWKSTVNEQVAVHGSSNAAAIPAAQSLEVKAAGDNGDKXXXXXXXXXXXXXTMTGSAISAFMSEVADLIKLVDSRDIMELQLKQQDCEI
A9P0L3_______________MATVPTASATAPLLAEANSGNSSGVLSSPVSQQHQVRVSNPRARSRGSVLASSFSGSRLDRPFAGQLEGLRGSRPALWKSPVNEQVAVHGFSNAAAVPAAESLEVKSAEDNGDKLAEESASSSSSPSIMAGSAISAFMSEVTDLIKLVDSRDIMELQLKQQDYEI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
875	10		90		0.90298
877		90	10		0.90298
878		90	10		0.90298
879	90		10		0.90298
1142	16			83	0.994512
1143	16			83	0.994512
1144	16	83			0.994512
1145	16			83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
784	797	TGG TGG TGG TGG TG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain