SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21350

Length: 1586 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21350

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Cytochrome P450 720B2; AltName: Full=Cytochrome P450 CYPB gb\|AAX07432.1\| cytochrome P450 CYPB [Pinus taeda]	-	-	0.0	72%
FL-Next	tr=CYP720B2; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Source	Gene names
Sma3	CYP720A1; CYP720B1; CYP720B2; GSVIVT00013859001; POPTRDRAFT_585891; POPTRDRAFT_820409; RCOM_0399170; RCOM_1607300; VITISV_020361;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: E5FA69

Fln msg:

Fln protein: MGIMAETNVTYSWLVGFVCFVLAMILIQLYRIVDNRSYNLPPGSRGWPLIGESLGFMRAINSGSQPRRFIQDRELRYGEIFRSNLFGRSRMIVSVDPEFNKHILQNEGRLFQSNYPRPFRNLIGKFALLSVHGDLQKKLHGTAVNFLGFEKLRVHFMDDIQNLMQATFAQWQAKRDIHLHEECHQLVLNLMAKQLLDLSPSKETEEIGKAFAAFSKAFLAVPIRIPGTSYARGIKGREFLIKKINEGIKHRRQHPDEAVHNDFLGELLKEDLHSEEVIADLVLFLLFAGHETSASAMVFSIKFLTDCPRALHELKEEHGALLKRKGSPRNQKLTWDDYQSMKFTECVIYETLRLANVAPALYREAKEDIKIKGGFVIPRGWTVMILLNSMHLDEKYHSSALTFDPWRWQRQLENNELSKNPSFIPFGGGARLCPGMHLAKLELALFLHNFVTKFRWEALEDDKISYFPVSHLTLD*

Protein Length: 477

Fln nts: ATGGGAGATTGATTGATAACCATTCAAATTAGTAAGAGATTGGGGATAGTTGCGCTCCGAGGAAAGCATTGAA_-_ATGGGGATCATGGCGGAAACTAATGTTACGTATTCATGGCTGGTGGGCTTCGTCTGTTTCGTTCTAGCGATGATACTGATTCAGCTCTACAGAATAGTGGACAATCGAAGCTACAATTTACCTCCCGGTTCCAGAGGGTGGCCATTGATTGGAGAATCCCTGGGCTTCATGCGAGCGATTAATTCGGGTTCACAACCACGCCGATTCATTCAAGATCGAGAGCTAAGGTATGGCGAGATATTCAGATCAAATTTGTTCGGAAGATCTCGAATGATTGTGTCTGTGGATCCAGAATTCAACAAACATATTCTGCAAAATGAAGGCAGGCTGTTTCAATCCAATTATCCGAGACCTTTTCGAAATCTCATCGGCAAATTCGCTTTGCTTTCGGTACACGGAGATCTCCAGAAGAAGCTCCACGGAACGGCCGTAAATTTCCTGGGGTTCGAGAAGCTGCGTGTGCACTTCATGGACGACATACAGAACCTTATGCAAGCCACCTTCGCCCAGTGGCAAGCCAAGAGGGATATCCACCTTCACGAGGAGTGCCATCAGCTTGTTCTGAATTTGATGGCAAAACAATTGCTGGACTTATCTCCGTCCAAGGAGACGGAAGAGATCGGTAAGGCATTCGCCGCTTTTTCTAAAGCTTTCCTTGCCGTTCCCATTAGAATCCCGGGTACCTCGTACGCCAGAGGAATTAAGGGCAGAGAGTTTCTGATAAAAAAGATTAATGAGGGTATAAAGCACAGAAGGCAGCATCCAGATGAAGCTGTCCACAATGATTTCTTAGGAGAACTCTTGAAAGAAGACTTGCATTCGGAAGAAGTTATAGCAGATTTAGTATTATTCCTGCTCTTCGCTGGTCACGAGACCTCAGCCTCAGCGATGGTATTTTCTATCAAATTTCTCACGGACTGTCCCCGGGCACTTCACGAACTGAAGGAGGAGCACGGCGCTCTGTTAAAGAGAAAGGGGAGTCCAAGAAACCAAAAGCTCACTTGGGATGACTACCAGTCAATGAAATTCACCGAATGTGTCATATATGAAACACTTCGTCTCGCCAACGTCGCTCCAGCGCTTTACAGAGAAGCAAAAGAAGACATTAAAATTAAAGGAGGCTTTGTGATTCCAAGAGGGTGGACGGTCATGATACTTCTGAACAGCATGCATCTGGACGAAAAGTACCATTCTTCTGCGCTCACATTTGACCCATGGCGTTGGCAACGGCAGCTCGAAAATAATGAGCTCTCAAAGAACCCCTCTTTTATACCTTTTGGAGGGGGGGCCAGGCTCTGTCCAGGAATGCATCTGGCAAAACTTGAGCTGGCCCTCTTTCTTCATAACTTCGTCACCAAATTCAGATGGGAGGCACTGGAGGATGATAAGATCTCCTACTTTCCTGTTTCTCACTTGACTCTTGACTAA___AGGCTTTCCGATCCGTCTACATCATCTTCAAGAACGAATGGATGATTAATCGCATTATAATATGATTTGATTCATGCAGTATGGA

Fln Alignment:

Contig21350___MAETNVTYSWLVGFVCFVLAMILIQLYRIV---DNRSYNLPPGSRGWPLIGESLGFMRAINSGSQPRRFIQDRELRYGEIFRSNLFGRSRMIVSVDPEFNKHILQNEGRLFQSNYPRPFRNLIGKFALLSVHGDLQKKLHGTAVNFLGFEKLRVHFMDDIQNLMQATFAQWQAKRDIHLHEECHQLVLNLMAKQLLDLSPSKETEEIGXXXXXXXXXXXXVPIRIPGTSYARGIKGREFLIKKINEGIKHRRQHPDEAVHNDFLGELLKEDLHSEEVIADLVLFLLFAGHETSASAMVFSIKFLTDCPRALHELKEEHGALLKRKGSPRNQKLTWDDYQSMKFTECVIYETLRLANVAPALYREAKEDIKIKGGFVIPRGWTVMILLNSMHLDEKYHSSALTFDPWRWQRQLENNELSKNPSFIPFGGGARLCPGMHLAKLELALFLHNFVTKFRWEALEDDKISYFPVSHL
E5FA69_______________MAET-LAYSWLVGLVCFVLGLLLLQLYKLVWRVDNRGYKLPPGSTGWPVIGETISFFRGINSTAQPRQFIQDREQRYGEIFRSNLFGRSRIVVSVDPEFNKHVLQHEGRQFQANYPKPLRNLIGKFGLLSVHGDLQKKLHGTAVNLLRFERLSVDFMEDIQNLLHITLAKWQAKRDVHLQEECHQLVLNLMAKQLLDLSPSKETEEICEAFGHFSDALLSVPIRIPGTAYARGFKAREFLIKKIYEGIEDRRKHP-QAVHNDLLTKLLKEDSLSEEVIADFILFLLFAGHETSSRSMSFAIKFLTGCPRALEELKAEHDALLKRKGKQKNQKLNWDDYQSMKFTQCVINETLRLGNFGPGVFREAKEDIKTKGGFMIPRGWTVYVFLTGTHLDNKYHSSALTFDPWRWQQHLQDQELSKNPSFMPFGGGARLCPGMHLAKLELALFLHNFVTKFRWEALQHDKISYFPFPRL

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
814			33	66	0.997452
817			33	66	0.997452
856		25		75	0.996473
865		75		25	0.996473
898	75		25		0.996473
907	75			25	0.996473
919	25		75		0.996473
923		75		25	0.996473
1011	25		75		0.996473
1051	75		25		0.996473
1138		14	85		0.993533
1151		14		85	0.993533
1161	14			85	0.993533
1175			83	16	0.994512
1176	83			16	0.994512
1222	39		60		1.0
1229	60		39		1.0
1242			69	30	1.0
1243		69	30		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain