SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21317

Length: 2346 nt

UniGene Fasta

>sp_v3.0_unigene21317
CGACATGACCATGGCAATATTTTATCGTTAATATAGCCCGGATATGAGGGATTTCCTTCGGATCTGAGGGGTCTCATCTCTTTATAAACATGGCAGGAATGGAATTCTAGTGGACGACTCGACACTCTGTGTACTTTCATTGGTGTGATTTAACGCTACTGAGGATTTGGAGGCATTCTGTTTCTTCTCCATGGATCTAAGATGGATTCCATTGCTCTTGTCTGTGCTATGCCTGATATCGCTATTGAATGTATTCGTTTCAGCCTATGAACCGGTGTTTTATGAGCCCTTCGACAAGCCGTTCGAAGGGAGATGGATTGTATCCAAAAAGACGACTATAAAGGTGTGTGGAAGCACGAGAAGAGTGAAGGTCATGAAGATTATGGTCTCCTTGTGAGTGAAGCGGCAAGAAAGTATGCCATAGTAAGAGAATTACCAGAGGTCATCGACCCCAAGGATGAGCCATTGGTGTTACAGTATGAGGTCCGCTTACAGAATGGACTGGAGTGTGGAGGTGCTTATTTGAAGTACCTTCGACCCCAAGAAAGTGGATGGAAACCAGCAGAGTTTGACAATGACTCCCCCTACTCTATTATGTTTGGACCAGATAAATGTGGAACTACTAACAAAGTACACTTCATCTACAAGCACAAAAATCCAAAGTCTGGGGAATACGTTGAGCACCATCTCAAGTATCCTCCATCTACGCCCTTTGACAAACTGACTCATGTTTATACAGCCATCTTGAAACCCAATAATGAAGTGAGAATTTTGATTGATGGAGAAGAGAAGAAAAAGGCAAATCTTCTTTCTGGGGATGATTTTGAGCCTGCTCTTATTCCACCTAAGACAATTCCCGATCCAGAGGATAAGAAGCCAGAAGATTGGGATGAGAGAGCAAAGATCCCTGATCCTGATGCAAAGAAGCCTGATGATTGGGATGAGGATGCACCAATGGAAATTGAAGATTTGGAGGCTGAGAAGCCTGAAGGATGGCTGGATGATGAACCCGAGGAGATTGATGATCCTGAAGCTACAAAGCCAGATGATTGGGATGATGAGGAAGACGGAGAATGGGAGGCACCAAAGATATCTAATCCCAAGTGTGATGAGGCACCTGGATGTGGTGAATGGGAAAAACCCATGAAGAGTAACCCTGACTACAAGGGCAAGTGGTATGCTCCAATGATTGACAATCCTAACTACAAGGGTATCTGGAAACCACAACAGATTCCAAACCCTGACTTCTTTGAACTGGAAAAGGCTGACGTTGAACCAATAGCAGCTATTGGTATCGAAATTTGGACAATGCAAGATGGAATTTTATTTGACAACATACTGATTACACGAGATGAGATGGTTGCAGAGGAGTTCAGATCAGAAACATGGAAGGGAAAATTTAGCACAGAAAAAGAAAAGCAGAAGCTGGAAGATGCCGATGATTCTCTGCCAGGAGAGCACTCTGGTTTCCAGAAGAAAATTTTTGATTTCCTCTATGCGATAGCAAACATCCCGTTCTTGGATGCATACAAGTTGAAGATTGTTGATTTAATTGAGAAAGGTGAAAAGAAACCAAATTTGACAATCGGCATTTTGGTGGCTATTTTGGTAGTTCCACTGACATCGATTTTCATGATTCTTTTTGGTCGTAAGAAACAACCTGTTCAAAAGGTGGAGTCAAAAAGCCAGGCTGATCAGGACGGTTCTACTTCTGAGAGTAATAAAGAAGGTTCAGATGGTGCAGCAGAGAAGGAAATATCTGGAGATGAAAATGAAACAGAAGGAGAAGGTGTAGCCCCCCGCCAAAGAAGAACAAGGCGTGAGACATAAATCCTGGTTCATGGAGAAGAATTTTGACAGTGAAGTTCACTGCATGTGATGAACAGATCTGTCAAATCTATTCATCCGTTTTTATAGGTCCTAGGTAGATTAGGAGGAACGTTCAGACAATCTGCATCCTCCATCATTCTTTGGTTGGTGAAGTCGGATGACATTTTTCTGGGGCTGTTTCAACTGTTTGTATGACACTCGGAAGTATAGCTTTCATTTGCGTATTGAAAATGTGAGCTCTAGATGACTTCTTGATGTGCTGTAAGCCCCACTCATTTGAAAAATTGTATCGATTATTTGCATGTACCAAATTCCAATCCGTTGGAAAGAGCCTTGCATGTCATGATAGCTTTTAGTATTCTTCTAAATTTTGATTTGAAGTTGTTCAATTTGATTTATAAACAGTTACCTAACTTTGTCTTCTGATGAGGAATGCAAATTACGTCCGGTTAATTCTCGAATGAAAATACATGACACACAGTGAATAAAAGACAAATCAAAGTTGGGTTTCTGTCT

Ace file of the UniGene sp_v3.0_unigene21317

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Calnexin homolog; Flags: Precursor gb\|AAA80588.1\| calnexin [Glycine max]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Calreticulin	-	-	4.21e-23	-

Source	Gene names
Sma3	At1g09210; At5g07340; At5g61790; CAL1; CAX1; CHLREDRAFT_108711; CNX; CNX1; CRH1; CRH2; CRT1; CRT2; CRTL; Crt1; EEF22; GSVIVT00006229001; GSVIVT00011650001; GSVIVT00022619001; GSVIVT00028103001; Gm cnx-1; Gm crt-1; LOC_Os03g61670; LOC_Os07g14270; LeCNX61.0

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	Calreticulin/calnexin	IPR001580	-	-
Sma3	Calreticulin/calnexin, P	IPR009033	-	-
Sma3	Calreticulin	IPR009169	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Calreticulin/calnexin, conserved site	IPR018124	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G61790.1	CNX1, ATCNX1 calnexin 1 chr5:24827394-24829642 REVERSE LENGTH=530	69%
RefSeq	Arabidopsis thaliana	NP_200987.1	calnexin 1 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002318189.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT78

Fln msg: Overlapping hits, possible frame ERROR between 343 and 325,

Fln protein: MDLRWIPLLLSVLCLISLLNVFVSAYEPVFYEPFDKPFEGRWIVxxxxxxxxVWKHEKSEGHEDYGLLVSEAARKYAIVRELPEVIDPKDEPLVLQYEVRLQNGLECGGAYLKYLRPQESGWKPAEFDNDSPYSIMFGPDKCGTTNKVHFIYKHKNPKSGEYVEHHLKYPPSTPFDKLTHVYTAILKPNNEVRILIDGEEKKKANLLSGDDFEPALIPPKTIPDPEDKKPEDWDERAKIPDPDAKKPDDWDEDAPMEIEDLEAEKPEGWLDDEPEEIDDPEATKPDDWDDEEDGEWEAPKISNPKCDEAPGCGEWEKPMKSNPDYKGKWYAPMIDNPNYKGIWKPQQIPNPDFFELEKADVEPIAAIGIEIWTMQDGILFDNILITRDEMVAEEFRSETWKGKFSTEKEKQKLEDADDSLPGEHSGFQKKIFDFLYAIANIPFLDAYKLKIVDLIEKGEKKPNLTIGILVAILVVPLTSIFMILFGRKKQPVQKVESKSQADQDGSTSESNKEGSDGAAEKEISGDENETEGEGVAPRQRRTRRET*

Protein Length: 548

Fln nts: CGACATGACCATGGCAATATTTTATCGTTAATATAGCCCGGATATGAGGGATTTCCTTCGGATCTGAGGGGTCTCATCTCTTTATAAACATGGCAGGAATGGAATTCTAGTGGACGACTCGACACTCTGTGTACTTTCATTGGTGTGATTTAACGCTACTGAGGATTTGGAGGCATTCTGTTTCTTCTCC_-_ATGGATCTAAGATGGATTCCATTGCTCTTGTCTGTGCTATGCCTGATATCGCTATTGAATGTATTCGTTTCAGCCTATGAACCGGTGTTTTATGAGCCCTTCGACAAGCCGTTCGAAGGGAGATGGATTGTAxxxxxxxxxxxxxxxxxxxxxxxxGTGTGGAAGCACGAGAAGAGTGAAGGTCATGAAGATTATGGTCTCCTTGTGAGTGAAGCGGCAAGAAAGTATGCCATAGTAAGAGAATTACCAGAGGTCATCGACCCCAAGGATGAGCCATTGGTGTTACAGTATGAGGTCCGCTTACAGAATGGACTGGAGTGTGGAGGTGCTTATTTGAAGTACCTTCGACCCCAAGAAAGTGGATGGAAACCAGCAGAGTTTGACAATGACTCCCCCTACTCTATTATGTTTGGACCAGATAAATGTGGAACTACTAACAAAGTACACTTCATCTACAAGCACAAAAATCCAAAGTCTGGGGAATACGTTGAGCACCATCTCAAGTATCCTCCATCTACGCCCTTTGACAAACTGACTCATGTTTATACAGCCATCTTGAAACCCAATAATGAAGTGAGAATTTTGATTGATGGAGAAGAGAAGAAAAAGGCAAATCTTCTTTCTGGGGATGATTTTGAGCCTGCTCTTATTCCACCTAAGACAATTCCCGATCCAGAGGATAAGAAGCCAGAAGATTGGGATGAGAGAGCAAAGATCCCTGATCCTGATGCAAAGAAGCCTGATGATTGGGATGAGGATGCACCAATGGAAATTGAAGATTTGGAGGCTGAGAAGCCTGAAGGATGGCTGGATGATGAACCCGAGGAGATTGATGATCCTGAAGCTACAAAGCCAGATGATTGGGATGATGAGGAAGACGGAGAATGGGAGGCACCAAAGATATCTAATCCCAAGTGTGATGAGGCACCTGGATGTGGTGAATGGGAAAAACCCATGAAGAGTAACCCTGACTACAAGGGCAAGTGGTATGCTCCAATGATTGACAATCCTAACTACAAGGGTATCTGGAAACCACAACAGATTCCAAACCCTGACTTCTTTGAACTGGAAAAGGCTGACGTTGAACCAATAGCAGCTATTGGTATCGAAATTTGGACAATGCAAGATGGAATTTTATTTGACAACATACTGATTACACGAGATGAGATGGTTGCAGAGGAGTTCAGATCAGAAACATGGAAGGGAAAATTTAGCACAGAAAAAGAAAAGCAGAAGCTGGAAGATGCCGATGATTCTCTGCCAGGAGAGCACTCTGGTTTCCAGAAGAAAATTTTTGATTTCCTCTATGCGATAGCAAACATCCCGTTCTTGGATGCATACAAGTTGAAGATTGTTGATTTAATTGAGAAAGGTGAAAAGAAACCAAATTTGACAATCGGCATTTTGGTGGCTATTTTGGTAGTTCCACTGACATCGATTTTCATGATTCTTTTTGGTCGTAAGAAACAACCTGTTCAAAAGGTGGAGTCAAAAAGCCAGGCTGATCAGGACGGTTCTACTTCTGAGAGTAATAAAGAAGGTTCAGATGGTGCAGCAGAGAAGGAAATATCTGGAGATGAAAATGAAACAGAAGGAGAAGGTGTAGCCCCCCGCCAAAGAAGAACAAGGCGTGAGACATAA___ATCCTGGTTCATGGAGAAGAATTTTGACAGTGAAGTTCACTGCATGTGATGAACAGATCTGTCAAATCTATTCATCCGTTTTTATAGGTCCTAGGTAGATTAGGAGGAACGTTCAGACAATCTGCATCCTCCATCATTCTTTGGTTGGTGAAGTCGGATGACATTTTTCTGGGGCTGTTTCAACTGTTTGTATGACACTCGGAAGTATAGCTTTCATTTGCGTATTGAAAATGTGAGCTCTAGATGACTTCTTGATGTGCTGTAAGCCCCACTCATTTGAAAAATTGTATCGATTATTTGCATGTACCAAATTCCAATCCGTTGGAAAGAGCCTTGCATGTCATGATAGCTTTTAGTATTCTTCTAAATTTTGATTTGAAGTTGTTCAATTTGATTTATAAACAGTTACCTAACTTTGTCTTCTGATGAGGAATGCAAATTACGTCCGGTTAATTCTCGAATGAAAATACATGACACACAGTGAATAAAAGACAAATCAAAGTTGGGTTTCTGTCT

Fln Alignment:

Contig21317___SMDLRWIPXXXXXXXXXXXXNVFVSAYEPVFYEPFDKPFEGRWIVSxxxxxxGVWKHEKSEGHEDYGLLVSEAARKYAIVRELPEVIDPKDEPLVLQYEVRLQNGLECGGAYLKYLRPQESGWKPAEFDNDSPYSIMFGPDKCGTTNKVHFIYKHKNPKSGEYVEHHLKYPPSTPFDKLTHVYTAILKPNNEVRILIDGEEKKKANLLSGDDFEPALIXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXMEIEDLEAEKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKISNPKCDEAPGCGEWEKPMKSNPDYKGKWYAPMIDNPNYKGIWKPQQIPNPDFFELEKADVEPIAAIGIEIWTMQDGILFDNILITRDEMVAEEFRSETWKGKFSTEKEKQKLEDADDSLPGEHSGFQKKIFDFLYAIANIPFLDAYKLKIVDLIEKGEKKPNLTIGILVAILVVPLTSIFMILFGRKKQPVQKVESKSQADQDGSTSESNKEGSDGAAEKEISGDENETEGEGVAPRQRRTRRET
C0PT78_______________SMDRRWIPSLLAAVCLISSLNVLVSASEQTFYESFDESFDGRWIASxxxxxxGVWKHEKSEGHEDYGLLVSEVAKKYAIVRELPETIDPKDGLVVLQYEVRLQNGLECGGAYLKYLRPQEAGWKPAEFDNESPYSIMFGPDKCGATNKVHFIYKHKNPKSGEYVEHHLKYPPSTPSDKLTHVYTAILKPNNEVRILIDGEEKKKANLLSGDDFEPALIPPETIPDPEDKKPEDWDERAKIPDPDAKKPEDWDEDAPMEIEDLEAVKPEGWLDDEPEEIDDPESTKPDDWDDEEDGEWEAPKVSNPKCDEAPGCGEWTRPMKSNPDYKGKWYAPMIDNPNYKGIWKPQQIPNPDFFELEKPDLEPIAAIGIEIWTMQDGILFDNILITGDEKVAEEYRVKTWKEKFTIEKEREPSEDVDVPLPGELSGLQKKIFDVLYRIANIPFLDAYKLKIIDLIEQGEKKPNLTIGILVAVLLVILTAVYRVLFGSKKQPVQVAELNTQPEQDASASENNKEASDGAAENEKSGDENEIEGEDAAPRQRRVRRET

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
472			25	75	0.996473
494		75		25	0.996473
1838		66	33		0.997452
1839		66	33		0.997452
1880		40		60	1.0
1883		40	60		1.0
1884	60		40		1.0
1890	66	33			1.0
1891			66	33	1.0
1892	66		33		1.0
1893			33	66	1.0
1900	83			16	0.994512
1901	66	33			1.0
1902	16			83	0.994512
1933			87	12	0.992554
1946	12		87		0.992554
2010		60		40	1.0
2036			88	11	0.923564
2056		77		22	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain