SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21310

Length: 894 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21310

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] ref\|NP_974317.1\| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj\|BAA97064.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL36202.1\| putative RNA-binding protein [Ar	-	-	1.0e-07	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	Gene names
Sma3	PHYPADRAFT_44443;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002308372.1	predicted protein [Populus trichocarpa]	1.0e-14	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP9

Fln msg: warning!, putative chimeric sequence! or repetitive structure your sequence is shorter than subject: 251 - 365

Fln protein: CPLLFIVQGRITVTNLAVPSTGPGQSADQAQRKLYIGGLSYDTAKDKILEVSSKYGEREGGSVAYDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHNLQYLHKCKQLMEQTIQACTRITGQVHRYQPLHHHQLVSQHMYLSLHMQHNQPTYGGISSASQYGVLSSTTPYSSNQYAKYATSLQDPRLVPSKLHTTGGGAGPGPGYPYYGSTGPGF*

Protein Length: 252

Fln nts: ATGTCCATTGTTGTTTATTGTACAAGGGAGAATTACTGTAACCAATCTGGCAGTGCCCAGCACAGGTCCTGGTCAAAGTGCAGATCAGGCTCAAAGAAAACTTTACATTGGTGGTCTTTCATATGACACGGCCAAGGATAAGATTCTAGAAGTTTCTTCCAAATATGGAGAGAGAGAAGGTGGTTCAGTTGCATATGATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCATCACAACCTGCAATATCTCCACAAATGCAAACAGCTTATGGAACAGACTATTCAAGCCTGTACTCGTATCACAGGCCAGGTCCACAGGTACCAACCTCTGCACCACCACCAATTGGTTTCTCAGCATATGTATCTCAGCCTCCATATGCAACACAACCAACCTACATATGGAGGAATTTCATCTGCTTCTCAATATGGTGTTCTAAGCTCCACAACACCATACAGCTCAAACCAGTATGCAAAATATGCAACATCCCTTCAAGATCCACGATTGGTTCCATCAAAATTGCACACAACAGGTGGTGGAGCAGGTCCTGGTCCAGGCTACCCATACTATGGTTCGACTGGACCTGGCTTTTAATCGACCAATTTTTTTATTGAGAAATATGTTCATCAAATCAATGGCAGTTAGTTTGGGATTCTACATGCATTAACAATTTAACTAGACTGTGACGTAATACTACTGGAGTCCACTTGATAGCAGTCTACTCACTATTTTAAA

Fln Alignment:

Contig21310___VQGRITVTNLAVPSTGPGQSADQAQRKLYIGGLSYDTAKDKILEVSSKYGEREGGSVAYDRIPTNPGDXXXXXXXXxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDCYYETWR*WSEGEAHHNLQYLHKCKQLMEQTIQACTRITGQVHRYQPLHHHQLVSQHMYLSLHMQH-NQPTYGGISSASQYGVLSSTTPYSSNQYAKYATSLQDPRLVPSKLH
A9NUP9_______________IDGRITVSNLAVASTGPGQSADQAQRKLYIGGLSYDTANDKLLEVFSKYGEIEEGSVAYDKNTNKSRGFAFVTFKTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-----QKEKPQSQPAVSPQMQPIPQLQTAYGTEYPSLN----SYHRPGPQVPAYPSGLTAYASQPPPYPTQPTYAGISSASQYGVLSSTTPYSSNQYAKYATSLQDPRLVPSGLH

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
677	66		33		0.997452
678	66		33		0.997452
710		33	66		0.997452
711	33		66		0.997452
745	33	66			0.997452
759	33		66		0.997452
761		66		33	0.997452
763	33			33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain