SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21304

Length: 1400 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene21304 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Sma3	Putative CC-NBS-LRR protein	-	-	-

Source	Gene names
Sma3	At4g33300; CKD1; CKD10; CKD14; CKD18; CKD24-1; CKD25; CKD29; CKD32; CKD33; CKD38; CKD41; CKD45; CKD69; CKD7; CKD74; CKD86; CKD9; CKF4; GDF6-1; GDF6-12; GDF6-16; GDF6-26; GDF6-33; GDF6-56; GDF6-58-27; GDF8-19; GDF8-20; GDF8-21; GDF8-22; GDF8-24; GDF8-40; G

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Powdery mildew resistance protein, RPW8 domain	IPR008808	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002327103.1	nbs-lrr resistance protein [Populus trichocarpa]	0.0	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg: Overlapping hits, possible frame ERROR between 919 and 892, Distance to subject end: 320 aas, your sequence is shorter than subject: 466 - 835

Fln protein: WVYEKSLSILDRGVELVKKCRKTSPLNLFRNVRYASEIQQLEKEIRDFVQYELPLQLSLELSRDLAITQFKNLRHLYELEAVDERNVNETIVPKLTNDPDENAMMLQQMGSDGMFDGAFDESPTSNCKGSGKSDFVVGFEKNIDNLKRILLQRDVSVVGVQGMGGIGKTTMALSLCDDEEIKGTFQNNIIFITVSQSPNVKEILETMWEKIVRRKRPDFQNVEDAHRQLQQQLLTQAKRTLVVLDDVWSKAILEKLLFEGEGYKTLVTTRDRSIVRTTTSTRLYDLPLLDDDDALPxxxxxxxxxxxMPINADEQLVKQVQAECKGLPLALKVIGSSLHGQPHPAWESAKNKLLHGKSISDYHKEGLLRCLETSVDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFAILLELASRNLLNLTNSNLRSQAINYGSASELYFSQHDVMRDLALYL

Protein Length: 467

Fln nts: ATGGGTATATGAGAAATCTCTGAGCATCCTCGATAGAGGCGTAGAATTGGTGAAAAAGTGTAGGAAAACCAGCCCTCTTAATCTTTTCCGGAACGTTAGATATGCTTCTGAAATTCAGCAGCTGGAGAAGGAGATCCGTGACTTCGTTCAGTACGAGCTGCCGCTCCAACTATCGCTTGAGTTATCGCGTGACTTGGCTATCACTCAGTTCAAGAATCTTCGCCATCTCTACGAGTTGGAGGCAGTGGATGAGAGAAACGTGAATGAAACAATTGTTCCCAAGCTCACCAATGATCCCGATGAGAATGCGATGATGCTGCAACAAATGGGTTCTGATGGTATGTTTGATGGAGCTTTCGATGAATCTCCTACCTCTAATTGTAAAGGGTCAGGTAAGTCTGATTTTGTTGTGGGGTTCGAGAAAAATATTGATAATTTGAAGAGGATTCTGCTCCAGAGAGATGTGTCCGTGGTTGGAGTGCAAGGTATGGGGGGTATTGGCAAAACAACTATGGCATTGTCCCTCTGCGATGATGAAGAAATTAAAGGTACTTTTCAAAATAATATCATTTTTATCACGGTCTCGCAATCCCCAAACGTGAAGGAAATTTTAGAGACCATGTGGGAGAAGATTGTTCGGAGGAAGAGACCTGACTTTCAGAATGTTGAGGATGCACATAGACAGCTGCAGCAGCAGCTGCTGACGCAAGCCAAGCGAACTCTTGTGGTGTTGGATGATGTCTGGTCAAAGGCAATTTTGGAAAAATTGTTATTTGAAGGTGAAGGTTATAAGACCCTTGTGACTACCCGAGATCGTTCTATCGTGCGCACAACAACCTCTACCAGGCTTTATGATTTGCCACTGCTGGATGATGACGATGCTCTGCCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATGCCAATTAATGCAGACGAGCAGCTAGTCAAGCAGGTGCAAGCGGAATGTAAAGGTCTGCCACTTGCTCTGAAGGTGATTGGAAGCTCTTTGCATGGGCAGCCTCATCCGGCGTGGGAGAGTGCCAAGAACAAGCTTTTACATGGAAAATCAATATCAGATTATCACAAAGAAGGGCTTCTTAGATGCTTGGAAACCAGTGTTGATGTCCTGGATGAGGAAGCACGGGAGTGCTTCTTAGACTTGGGGTCATTTCCAGAGGATAGGAAAATCTCAGTGGATGCATTGCTAGATATTTGGGTTTATGTGCGAAAGATGGAGTGGCATGATGCGTTTGCCATCTTATTAGAACTTGCAAGCAGAAATCTGTTAAATTTAACAAACAGCAATCTCAGGAGCCAAGCAATCAATTATGGCAGTGCCTCTGAGCTGTACTTTTCTCAACATGATGTAATGCGGGATTTGGCCTTATATTTGGC

Fln Alignment:

Contig21304___VYEKSLSILDRGVELVKKCRKTSPLNLFRNVRYASEIQQLEKEIRDFVQYELPLQLSLELSRDLAITQFKNLRHLYELEAVDERNVNETIVPKLTNDPDENAMMLQQMGSDGMFDGAFDESPTSNCKGSGKSDFVVGFEKNIDNLKRILLQRDVSVVGVQGMGGIGKTTMALSLCDDEEIKGTFQNNIIFITVSQSPNVKEILETMWEKIVRRKRPDFQNVEDAHRQLQQQLLTQAKRTLVVLDDVWSKAILEKLLFEGEGYKTLVTTRDRSIVRTTTSTRLYXXXXXXXXXXXXLxxxxxxxxxTMPINADEQLVKQVQAECKGLPLALKVIGSSLHGQPHPAWESAKNKLLHGKSISDYHKEGLLRCLETSVDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFAIXXXXXXXXXXXXXXXXXXSQAINYGSASELYFSQHDVMRDLALYL
B8LKC3_______________IYEQFLNILNDGVALVKKCKNTSRYNVFQNLRYASQIHQLEKEITDFVRYQMPVNLSLDVKN--FIEELKNLRQLCEKGSVDERKVNEAIVPKLTNDPQKNAVMLQQIGSDDMFDGVLDEAPPSP-----KSDFVVGLEKNISNVKRILLDRDVSVVGVDGMGGVGKTTMAMALSDDQEIKGVFRNNIVFITVSQSPNLKVILETMWEKIVRRKKPEFQSVEDAHRQLQQQLLRQAKPTLVVLDDVWSRANLENLLFEGEGYKTLVTTRDRSTIPTTTSIRIYELPVLDDADAMPLxxxxxxxxxSIPSSADEHLVKQVQAECKGLPLALKVIGSSLHGEPRPVWESAKNKLRNGESISDYHKEGLLRRLESSIDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVI-LLELARRNLLNLTSNLRSRAINYGSASELYFSQHDVMRDLALHL

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
434	60		40		1.0
542	33		66		0.997452
549	66			33	0.997452
579		66	33		0.997452
581		66		33	0.997452
591	66		33		0.997452
600	66			33	0.997452
615	66			33	0.997452
616	33			66	0.997452
625	33	66			0.997452
657	33			66	0.997452
700		33	66		0.997452
720		66		33	0.997452
1009	20			80	0.995493
1011	80		20		0.995493
1014		20		80	0.995493
1017		80	20		0.995493
1023	80	20			0.995493
1028		20		80	0.995493
1032	20		80		0.995493
1037	20		80		0.995493
1040	80			20	0.995493
1062		80	20		0.995493
1071	80			20	0.995493
1073	80		20		0.995493
1077		80	20		0.995493
1086		80		20	0.995493
1095		80	20		0.995493
1107		20	80		0.995493
1109		20	80		0.995493
1116		20	80		0.995493
1131	80		20		0.995493
1134	20			80	0.995493
1204	50		50		1.0
1208		50		50	1.0
1219		50	50		1.0
1223	50	50			1.0
1227	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain