SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21242

Length: 831 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene21242 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Sma3	Tasselseed2-like short-chain dehydrogenase/reductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.10-	-	1.353e-12	-
Sma3	3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase.	EC:1.1.1.53	-	2.707e-27	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Steroid hormone biosynthesis	00140		2.707e-27	%
Sma3	Metabolic pathways	01100		2.707e-27	%

Source	Gene names
Sma3	3bhsd; ABA2; ADH; AT4g03140; At1g52340; At2g47130; At2g47140; At3g26760; At3g26770; At3g29250; At3g51680; CTA; CTS2; F19K6.3; F4C21.6; GIN1; GSVIVT00005501001; GSVIVT00021537001; GSVIVT00021538001; GSVIVT00021540001; GSVIVT00021542001; GSVIVT00021544001;

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xanthoxin dehydrogenase activity	GO:0010301	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	testosterone dehydrogenase [NAD(P)] activity	GO:0030283	Molecular Function	-
Sma3	proline biosynthetic process	GO:0006561	Biological Process	-
Sma3	immune response	GO:0006955	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	regulation of abscisic acid biosynthetic process	GO:0010115	Biological Process	-
Sma3	sugar mediated signaling pathway	GO:0010182	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	2-5-oligoadenylate synthetase, N-terminal	IPR006116	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:19173622-19174667 REVERSE LENGTH=303	53%
RefSeq	Arabidopsis thaliana	NP_190736.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002325666.1	predicted protein, partial [Populus trichocarpa]	53%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
587		14	85		0.993533
588	14		85		0.993533
593	85	14			0.993533
594		14		85	0.993533
597		85		14	0.993533
708			25	75	0.996473
712			25	75	0.996473
713	25	75			0.996473
715	25	50		25	0.995533
718		25	75		0.996473
719	25			75	0.996473
720	25			75	0.996473
722			25	75	0.996473
724	75	25			0.996473
726	75	25			0.996473
727		75	25		0.996473
729		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain