SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21240

Length: 1551 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21240

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein SAR1A n=5 Tax=Embryophyta RepID=B4FPT6_MAIZE	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Small GTPase superfamily, SAR1-type	IPR006687	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02080.1	ASAR1, ATSARA1C, ATSAR2, SAR2 secretion-associated RAS super family 2 chr4:921554-922547 FORWARD LENGTH=193	92%
RefSeq	Arabidopsis thaliana	NP_192117.1	GTP-binding protein SAR1A [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002316023.1	predicted protein [Populus trichocarpa]	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLN7

Fln msg:

Fln protein: MFLFDWFYSVLATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAADKERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRPIEVFMCSIVRKMGYGEGIKWLSQYIK*

Protein Length: 195

Fln nts: ATGGGGATTTATTTGTGTGTGAGGCTTTGCTCACAATGCCTTTTTCTCGGGATTTCAGAGCAGAATTCCTACGTGACTAGAAGCTCCGGGGACAGATCCGTTGTGGGTTCTTCGTCTTTGGAGCGTGGCTATTTATTTTCAGGGTCTCTGCAATTCTGGACCCTGAGCTTTCTAGGGTCGTTTTCGGCTTTGAAATACTTAATTCCAGGTCTGGTATATCAGAAAGTTCATCGTTTTCTCGATTTCTTTGGACTTCGGCTTATTCGACACGGTGAAAAGTCAATTGGGTTATTTGCAGATTATTGTTTTGGATCTGATTTCCCATTTGGGTATCCTTGTCTCTACGGAGTCATTCGCAGGTTCTGCTTAAGAAACTTTTGGAAGGCTCGAAG_-_ATGTTTCTGTTCGATTGGTTTTACAGCGTTCTTGCCACTCTAGGCCTGTGGCAGAAAGAGGCCAAGATTCTATTTCTTGGCCTAGATAATGCAGGCAAGACCACCTTGTTGCATATGTTGAAAGATGAGAGGTTAGTCCAACATCAACCTACTCAGTATCCTACATCTGAGGAACTGAGTATTGGTAAAATCAAGTTTAAGGCCTTCGATCTTGGAGGTCATCAAATTGCTAGAAGAGTCTGGAAAGACTATTATGCCAAGGTGGATGCCGTGGTCTATTTGGTTGATGCGGCAGATAAAGAGAGATTTGCAGAGTCAAAAAAGGAGCTCGATGCCTTACTTTCAGATGACTCTTTGACAAATGTGCCTTTCTTGATTTTAGGAAACAAGATTGATATTCCATATGCAGCATCTGAAGATGAGCTGCGCTATTACCTAGGCCTATCAAATTATACTACTGGCAAGGGCAAAGTGAATTTGGCAGATTCTAATGTTAGACCGATTGAGGTCTTCATGTGCAGTATCGTTAGGAAAATGGGTTATGGTGAAGGTATTAAATGGCTCTCTCAGTACATTAAATAG___GTTCACAAATGAACCGAGGAATCACCTTTTTGTTGTAATTAGTCAATGGCAGAACATTTAGTTTAGATTGTGTTCTTTTGAAATTGGTTAGTTTGGGGGCGGTATTTGTAATGAATGTTGAATAAGATGCGAAACGAATAGATCAGGACAGGAGAAATATGATTGCTGAGTCAAATTTAATTCAGAGTGCAGAGACTGTTAGTTATTCCTGACAATTTGAAAATTTCCTGGATATCATAATCATGAAATTGATTGTTTTAAACCCATCAGAAAGACTATTTTATATGCGTCAGATATCATAACATCTATGTCAGGACCTTGGATATCATCCCCATGTTACTGCAATACAGGGGTATCAAATTTTTTCTTGATTTTTAGTGAAACTCTGGTTCCGGTGTCATCAGTTTTCATTCTCATTTTTTAAGATCATTTATTAGGTACATTTTTATCTTCTAGGCTGTATTTATTTCTTATTCCAGTCAACAGTAAATGCAGCGGCATGGATATTGTGAAAGGGCATTCTATGTTCATACTCCTAATTATTAAGCTACTGTGCCTTAACGGTTGCTGGTCCTCG

Fln Alignment:

Contig21240___MFLFDWFYSVLATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRPIEVFMCSIVRKMGYGEGIKWLSQYIK
A9NLN7_______________MFLFDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAADKERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRAIEVFMCSIVRKMGYGEGIKWLSQYIK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
136	20			80	0.995493
208		10		90	0.90298
281	30		70		1.0
502		63		36	1.0
604		87		12	0.992554
748		83		16	0.994512
765		83		16	0.994512
920	85			14	0.999981
1010		15		84	0.999986
1229		4		95	0.996599
1323	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain