SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21238

Length: 1410 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene21238 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calnexin homolog n=2 Tax=Glycine max RepID=CALX_SOYBN	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Calnexin	-	-	9.527e-16	-

Source	Gene names
Sma3	AT4g32140; At4g32140; At5g07340; At5g61790; CNX; CNX1; F10N7.50; GSVIVT00006229001; GSVIVT00011650001; GSVIVT00032766001; Gm cnx-1; LeCNX61.0; MAC9.11; MICPUN_67567; OSJNBb0012E08.10; OSTLU_2616; Os04g0402100; OsI_15749; OsJ_14665; Ot03g03460; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	Calreticulin/calnexin	IPR001580	-	-
Sma3	Calreticulin/calnexin, P	IPR009033	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Calreticulin/calnexin, conserved site	IPR018124	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G61790.1	CNX1, ATCNX1 calnexin 1 chr5:24827394-24829642 REVERSE LENGTH=530	61%
RefSeq	Arabidopsis thaliana	NP_200987.1	calnexin 1 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002321768.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT78

Fln msg: Overlapping hits, possible frame ERROR between 1333 and 934, Distance to subject end: 163 aas, your sequence is shorter than subject: 379 - 549

Fln protein: MDSIAFGSAVPNVTVNALVSASESTFYESFDESFEGRWIVSQKEDYKGVWKYEKSKGHEDYGLLVSEAARKYAIVRELPETIDPKDGSLVLQYEVRLQNGLECGGAYLKYLRPQEAGWKPAEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSTPSDKKTHVYSAILTPDNQVRILIDGEEKKKANLLSADDFEPALIPPKTIPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPDLEPIAAIGIEIWTMQDGILFDNI

Protein Length: 380

Fln nts: GGTAAAAGAATTTTTGTTTATTGAACAAGAATCCTCGAATTGCATTGCCATATCAGAAACCCAGCTGCTTCGAACATTGATCTGAAAGATTTGCAATCACAAATCCTGCAAATACCTGAGCTGAACCAAGCACATAGATTGCAGAATAGTGACGCATGTGAATTACCATGTCAGCTCTGGAGATAGCTTAACGTACGCAGAGTGATTGGCTGTGTAAAGACGTTTATTTTCAGGTGGTTTGCAGGCATTTTTTGTATGGTCTCATGGATCGGAG_-_ATGGATTCCATTGCTTTTGGCTCTGCTGTGCCTAATGTCACCGTTAATGCCCTCGTTTCCGCTTCTGAATCGACTTTCTATGAATCTTTTGACGAGTCGTTCGAAGGGAGATGGATCGTATCCCAAAAGGAAGATTATAAAGGTGTATGGAAGTACGAAAAGAGTAAAGGTCATGAAGACTATGGTCTCCTTGTGAGTGAAGCGGCCAGAAAGTATGCCATAGTAAGAGAATTACCAGAGACCATTGACCCCAAGGATGGGTCACTGGTGTTACAGTATGAGGTCCGCTTACAAAATGGGCTGGAGTGTGGAGGTGCTTACTTGAAGTACCTACGGCCTCAAGAAGCTGGATGGAAACCAGCAGAGTTTGACAATGAATCCCCCTACTCCATTATGTTTGGACCAGATAAATGCGGTGCTACTAACAAAGTACACTTCATCTTCAAGCACAAGAATCCAAAGTCCGGGGAATATGTTGAGCACCATCTCAAGTATCCTCCATCTACGCCCTCTGACAAGAAGACTCATGTTTATTCAGCCATCTTGACACCTGATAATCAAGTTAGAATTTTAATTGATGGCGAAGAGAAGAAAAAGGCAAATCTTTTGTCAGCGGATGATTTTGAACCCGCCCTTATCCCACCTAAGACAATTCCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCTGATTTAGAACCAATTGCAGCTATTGGTATTGAAATCTGGACTATGCAAGATGGAATCTTGTTTGACAACATA

Fln Alignment:

Contig21238___TVNALVSASESTFYESFDESFEGRWIVSQKEDYKGVWKYEKSKGHEDYGLLVSEAARKYAIVRELPETIDPKDGSLVLQYEVRLQNGLECGGAYLKYLRPQEAGWKPAEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSTPSDKKTHVYSAILTPDNQVRILIDGEEKKKANLLSADDFEPALIPPKTIPDPEDKNQKTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIGEPDLEPIAAIGIEIWTMQDGILFDNI
C0PT78_______________SLNVLVSASEQTFYESFDESFDGRWIASQKEDYKGVWKHEKSEGHEDYGLLVSEVAKKYAIVRELPETIDPKDGLVVLQYEVRLQNGLECGGAYLKYLRPQEAGWKPAEFDNESPYSIMFGPDKCGATNKVHFIYKHKNPKSGEYVEHHLKYPPSTPSDKLTHVYTAILKPNNEVRILIDGEEKKKANLLSGDDFEPALIPPETIPDPEDKKPEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEKPDLEPIAAIGIEIWTMQDGILFDNI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
729		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain