SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21157

Length: 1627 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21157

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP synthase gamma chain n=1 Tax=Picea sitchensis RepID=A9NLA3_PICSI	-	-	92%
FL-Next	sp=ATP synthase gamma chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	ATP synthase gamma chain	-	-	-

Source	GOs	Term	Type	Identity
Sma3	proton-transporting ATP synthase complex, catalytic core F(1)	GO:0045261	Cellular Component	-
Sma3	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	-
Sma3	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1 complex, gamma subunit	IPR000131	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G33040.1	ATP3 gamma subunit of Mt ATP synthase chr2:14018978-14021047 REVERSE LENGTH=325	67%
RefSeq	Arabidopsis thaliana	NP_180863.1	ATP synthase subunit gamma [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002318589.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLA3

Fln msg:

Fln protein: MASAGLRREVRRLGSLTASGTLKALTGSPWPQPTIHQAQELPAFGSRTISTQIVRNRMKSVKSIQKITKAMKMVASSKLRAIQTKAENSRGLWQPFTALIGDVPGINVKKNIFLIVTSDKGLCGGINSTSVKISKTFAKIESGPEKEPKYVVVGEKGKSLLQRDSSKNISLSVGEMQKNPINFTQVSMLVDDILKNVEFDAVRIIFNRFQSIVSSAPTVSTVLSAEVVEKESESGGQLGDLDSYEIEGAETKGEVLQNLTEFHIVCALFNACLESACSEQGARMSAMDSSSRNAGEMLDRLTLSYNRTRQASITTELSEIISGAAALTG*

Protein Length: 331

Fln nts: CGTCGTGACCATGGCGAAAATCTTGGGTGTGCTCTGATGCTCCGTTGCAGATGACTGTCTTCCATTACCGAGACGGACATATATAGCTCTTATGCGACTGTCTCAAACCCTTTGAAACACCTTTTTGCTTGAGTTGGTTACGAGATCGAATCTGCTAACA_-_ATGGCTTCAGCTGGCCTCAGGAGAGAAGTAAGGCGCCTGGGCAGTCTGACTGCGTCAGGAACGCTCAAGGCCCTAACAGGATCACCATGGCCGCAGCCTACGATCCACCAGGCACAGGAGTTGCCTGCTTTTGGATCACGAACAATTTCTACTCAAATTGTGAGAAATAGAATGAAAAGTGTAAAGAGTATTCAAAAGATCACAAAGGCAATGAAGATGGTTGCATCATCAAAGTTAAGGGCAATACAAACAAAGGCCGAGAACTCTCGAGGATTATGGCAACCATTCACTGCATTGATTGGCGATGTTCCTGGGATTAATGTGAAGAAGAACATTTTTCTTATTGTTACCTCTGACAAAGGTCTTTGTGGTGGTATCAACTCCACATCTGTGAAGATAAGCAAGACATTTGCAAAGATTGAATCAGGTCCAGAAAAAGAGCCAAAATATGTTGTAGTTGGGGAAAAGGGCAAGTCACTGTTGCAGCGTGATTCAAGCAAAAATATTAGCCTGTCTGTAGGAGAAATGCAAAAGAATCCAATTAACTTTACACAGGTATCTATGCTTGTGGATGACATTTTGAAGAATGTGGAGTTTGATGCTGTAAGAATCATTTTCAACAGATTTCAGTCAATAGTCTCATCTGCACCAACTGTGTCCACTGTATTATCTGCTGAGGTTGTTGAGAAAGAGTCTGAATCAGGAGGACAACTTGGTGACTTAGATTCTTATGAAATTGAAGGAGCTGAAACAAAAGGAGAAGTGCTGCAAAATCTTACTGAATTTCACATTGTTTGTGCTTTGTTCAATGCTTGTTTGGAAAGTGCTTGTAGTGAACAAGGAGCCAGAATGTCTGCTATGGACAGCTCTAGCAGAAATGCTGGTGAGATGCTTGATCGGTTAACCCTGTCTTATAACAGAACTCGTCAAGCTTCGATTACAACAGAATTGTCAGAGATTATTTCTGGTGCTGCGGCTTTAACAGGATAA___AACTTGATTGACATCAGTTGCTTGACAGAATGTGGCTTATGTTTGTTCATATACCCCAAGAAGCATTTTATTGAATCGTGAGATTGATTTTTAAAATTTTGCATGGGGTGAAACTTGCACAATGGGAAAATAAATTCTAATAATTATGAATGCATGACAGTTCTTTGAAGGAGAGTCTGGTTCATGGTTCTCCGTTATTCTAAATTGAATCGAGAGCTTGAATAAGTATTTTTTGGAATTGGTTTTAACATTTTTTACAACTACTAAAGATTATTCATTTTCCGATATAAATTAAGATTTTTTGATGCAAACTTGTCAAATACAACCTTGTATGATATGGGGTGTGGCCTTTTTTGTTCTGTTTTGGTTGAACATATGGTGATTTCAGCCAGCCCTTTTGAGTCAGTTGGACCTTCATTGTCATCGGCTCTCCTAAAGTACCATGAAATAGAACCGTTGAGTCAACACCATGTTGGG

Fln Alignment:

Contig21157___MASAGLRREVRRLGSLTASGTLKALTGSPWPQPTIHQAQELPAFGSRTISTQIVRNRMKSVKSIQKITKAMKMVASSKLRAIQTKAENSRGLWQPFTALIGDVPGINVKKNIFLIVTSDKGLCGGINSTSVKISKTFAKIESGPEKEPKYVVVGEKGKSLLQRDSSKNISLSVGEMQKNPINFTQVSMLVDDILKNVEFDAVRIIFNRFQSIVSSAPTVSTVLSAEVVEKESESGGQLGDLDSYEIEGAETKGEVLQNLTEFHIVCALFNACLESACSEQGARMSAMDSSSRNAGEMLDRLTLSYNRTRQASITTELSEIISGAAALTG
A9NLA3_______________MASAFLRREARRLGSLTASGTLKALTGSPWPQSAIHQTQELPAFGSRTISTQIVRNRMKSVKSIQKITKAMKMVASSKLRAIQIKTENSRGLWQPFTALIRDVPGISVKKNVFLIVTSDKGLCGGINSTSVKISKTFAKLESGPEKEPKYIVLGEKGKSILQRDSSKDISLSVGEMQKNPINFTQVSMLVDDILKNVEFDAVRIIFNRFQSIVSFVPTVSTILSAEVAEKESEAGGTLGDLDSYEIEGSETKAEVLQNLSEFHIVCALFNACLESSCSEQGARMSAMDSSSRNAGEMLDRLTLSYNRTRQASITTELSEIISGAAALTG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
465		10		90	0.90298
637		20		80	0.995493
642	80		20		0.995493
727	20	80			0.995493
728	20			80	0.995493
1243	1	3		94	0.960243

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain