SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21141

Length: 1075 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21141

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL	-	-	2.0e-22	100%
FL-Next	tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	100%
Sma3	Glycine-rich RNA-binding protein	-	-	0.0	-

Source	Gene names
Sma3	AT2G21660; AT4G39260; At1g74230; At2g16260; At2g21660; At3g23830; At4g13850; At4g39260; B1130H05.5; CCR1; DcGRP1; F18A5.240; F1O17.10; F2G1.7; GRP; GRP-1; GRP-2; GRP-3; GRP1; GRP10; GRP2; GRP7; GRP8; GRRBP1; GRRBP2; GSVIVT00002259001; GSVIVT00016201001; G

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	double-stranded DNA binding	GO:0003690	Molecular Function	-
Sma3	single-stranded DNA binding	GO:0003697	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	mRNA export from nucleus	GO:0006406	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	circadian rhythm	GO:0007623	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3	RNA secondary structure unwinding	GO:0010501	Biological Process	-
Sma3	DNA duplex unwinding	GO:0032508	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Dyskerin-like	IPR012960	-	-
Sma3		IPR015465	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G21660.1	ATGRP7, CCR2, GR-RBP7, GRP7 cold, circadian rhythm, and rna binding 2 chr2:9265477-9266316 REVERSE LENGTH=176	1.0e-22	77%
RefSeq	Arabidopsis thaliana	NP_850017.1	glycine-rich RNA-binding protein 7 [Arabidopsis thaliana]	1.0e-22	77%
RefSeq	Populus trichocarpa	XP_002305429.1	predicted protein [Populus trichocarpa]	7.0e-22	78%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
479			94	5	0.9982
510	2	91		5	0.993509
619		15		84	0.999986
621	10			90	0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
328	343	TGG TGG TGG TGG TGG T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain