SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21140

Length: 1183 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21140

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative acid phosphatase (Fragment) n=1 Tax=Pinus pinaster RepID=Q8RVJ4_PINPS	-	-	0.0	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Putative acid phosphatase	-	-	1.411e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	2.22e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		2.22e-12	%
Sma3	Riboflavin metabolism	00740		2.22e-12	%

Source	Gene names
Sma3	57h21.11; ACP; APS-1; APS-1(1); APS-AA2; APS1; AT4g25150; At2g38600; At4g25150; At4g29260; At4g29270; At5g24770; At5g44020; At5g44020/MRH10.13; At5g51260; B1007D10.12; B1007D10.16; B1140B01.1; B15-3-5; F13M23.290; GSVIVT00016639001; GSVIVT00025255001; GSV

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	defense response to insect	GO:0002213	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	senescence	GO:0010149	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	response to copper ion	GO:0046688	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Vegetative storage protein	IPR011267	-	-
Sma3	Vegetative storage protein/acid phosphatase	IPR014403	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G29260.1	HAD superfamily, subfamily IIIB acid phosphatase chr4:14422310-14423409 REVERSE LENGTH=255	47%
RefSeq	Arabidopsis thaliana	NP_194655.1	HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002309231.1	predicted protein, partial [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA42

Fln msg:

Fln protein: MAFMLASATIFKFLLFLFLFLLSTAAANGSSKSKHCGHSASSRCPAWRLSVETGNLKDWDVVPAKCVSYVEKYMKTGGQYWEDSNVAVVNILKYAESLTLAGDGMDAWVFDADETLLSNIPYYENYEYGGLAFDSKTFDAWVLEMKAPALPSSLLLFDRLLTHGFQIFILTGRDEAQRNVSVQNLVEAGYKGWAGLILRQESDQGTSASVYKPKKRGELVKKGYRLWGSVGDQWSDLSGPYEASRSFKLPNPMYYIG*

Protein Length: 259

Fln nts: ACCGACGACAGGCTAAGCGTCAAATATATCTCAATTCTTGCT_-_ATGGCGTTCATGTTAGCATCGGCTACCATATTCAAGTTTCTTTTGTTCCTCTTCCTGTTCCTGCTCAGCACGGCTGCAGCCAATGGGTCGTCCAAGTCGAAGCATTGCGGCCATTCTGCCTCCTCCCGGTGCCCGGCCTGGAGATTGAGCGTGGAGACAGGCAACCTTAAAGATTGGGATGTCGTCCCAGCAAAGTGCGTGAGCTATGTGGAGAAATATATGAAGACAGGAGGCCAGTATTGGGAGGATTCCAATGTAGCAGTCGTAAATATTTTGAAGTATGCGGAGTCGCTCACGCTCGCGGGAGACGGGATGGATGCGTGGGTGTTCGATGCTGACGAAACTCTGCTATCCAATATCCCTTATTACGAAAATTATGAATATGGGGGCTTGGCATTCGATTCGAAAACATTTGATGCGTGGGTATTAGAAATGAAAGCACCTGCGCTGCCGTCGTCTCTGTTACTTTTTGACCGTTTGTTAACTCACGGCTTCCAGATCTTCATTCTAACTGGCCGAGACGAAGCCCAGCGGAATGTATCGGTCCAGAATCTGGTTGAGGCTGGCTACAAGGGCTGGGCTGGTTTGATACTGAGGCAGGAGAGCGATCAGGGCACCTCGGCGAGTGTGTACAAGCCCAAGAAGAGGGGAGAGCTGGTGAAGAAAGGTTATCGTTTATGGGGAAGCGTGGGCGATCAGTGGAGCGATTTGAGCGGACCCTATGAGGCATCGCGGTCTTTCAAGCTTCCCAACCCTATGTATTATATTGGTTGA___AGTAACCTGCAGAAGTACATCTCGTATCTATGTGACCGATACAATCCGTCTTCGTTTCAGCAATGCGACCTCATCTAATTTCCTCCATCTCCATCTATCTGTTTCTATGAAAAAGTAGTATTTCTGAGCCAAATTATTTTTTAGGTTCTGTCATGGACTGACCATGTTAATGAACATGGTTATTCTCTTTATGTGATTGCTTCACAATGTCAATGTCGATGTCAATGTTGTCGTCTCTAAATTCCTGTAATGTTGATGCCAAAGTTTTCCATTATGTCCTGTAATGTGAATGTCAAGTTTTGTATTATGTAACTAATACTCTTTTTCAAAACCAATAAAAGGAAAAATAATCCCCTCTTTTTTTCAC

Fln Alignment:

Contig21140___MAFMLASATIFKXXXXXXXXXXSTAAANGSSKSKHCGHSASSRCPAWRLSVETGNLKDWDVVPAKCVSYVEKYMKTGGQYWEDSNVAVVNILKYAESLTLAGDGMDAWVFDADETLLSNIPYYENYEYGGLAFDSKTFDAWVLEMKAPAXXXXXXXXXXXXTHGFQIFILTGRDEAQRNVSVQNLVEAGYKGWAGLILRQESDQGTSASVYKPKKRGELVKKGYRLWGSVGDQWSDLSGPYEASRSFKLPNPMYYI
D5AA42_______________MAFVLASVAIFPFLLFLLLL--GTASANGLSKSKLSGRSAS-RCEGWRLSVESGNLRDWDVVPSKCVGYVQKYMMTAGQYWEDSKVAVFTILEYVKTLKLVGDGKDAWVFDIDETLLSNIPYYQQHEYGGKAFDSKTFEAWVLEMKSPALPSSLLLYNRLLARGFKIFLLTGRDESQRNGTVHNLFQAGYKGWAGLILRGVNEQGSQASAYKPEKRAELVKKGYRLWGSVGDQWSDLSGPYEASRSFKLPNPMYYI

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
160	66		33		0.997452
228		87		12	0.992554
244	85		14		0.993533
265	83		16		0.994512
288	85		14		0.993533
330	87		12		0.992554
339	87		12		0.992554
402	11	88			0.923564
825		41	58		1.0
847		42		57	1.0
866		55		44	1.0
871		41		58	1.0
912		42		57	1.0
921		58		41	1.0
936	52		47		1.0
964		66		33	0.997452
976		33	66		0.997452
1118		26		73	1.0
1123	14			85	0.999981
1137		80		20	0.999996
1145		12	87		0.992554
1151		20	80		0.995493
1156	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain