SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21120

Length: 470 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene21120
CGTCGTGACCTTGGCTGTCACTCATTTGTGGTGAGATCCGGTGATGGGATTGATTTAACGGTGAATGAGATTAAAGAATTCGTTGCCAAACAGGTGGTGTTCTACAAGAAGCTGCACAACGTTTATTTTATAGAAGCCATACCCAAATCTCCGTCTGGCCTTTGCTGCGCCAGGATTTAAGAGCCAAGCTTATGGCTGTCGCTGCAGGCATTCAATAGTTTCAGCGGCCATGGCAGAAGGAGCCTTATCTGCTTTTATATTAAAATATATACAGATTTTGTGTATTTTCTGGTGTCTCGCCAGCAGGATTGACCTTGTAGTGTAAGTTGTGAAAGTTTACTTATTCATTTATTTCCTCGTTCATTTTTAGCTGGCCTGAGATGACTCTGGACATGTTTCTAATTATAGTGTTGCTGCTGCCATGGTACGCATGGCATGACATGACAGAGTTGTTGTCTAGTTTATTCCTA

Ace file of the UniGene sp_v3.0_unigene21120 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-coumarate:CoA ligase n=1 Tax=Ipomoea batatas RepID=B6F2H0_IPOBA	-	-	3.0e-12	76%
FL-Next	tr=4-coumarate:CoA ligase; Pinus massoniana.	-	-	0.0	67%

Source	ECs	Term	Type	e value	Identity
Sma3	4-coumarate--CoA ligase.	EC:6.2.1.12	-	2.875e-21	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	2.875e-21	%
Sma3	Phenylalanine metabolism	00360	2.875e-21	%
Sma3	Phenylpropanoid biosynthesis	00940	2.875e-21	%
Sma3	Biosynthesis of phenylpropanoids	01061	2.875e-21	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	2.875e-21	%
Sma3	Metabolic pathways	01100	2.875e-21	%
Sma3	Biosynthesis of secondary metabolites	01110	2.875e-21	%

Source	Gene names
Sma3	4CL; 4CL.2; 4CL1; 4CL2; 4CL3; At1g65060; F16G16.6; GSVIVT00014031001; Gm4CL-3; Ib4CL; LOC_Os02g46970; Os02g0697400; OsI_08569; P0459B01.4-1; P0666E12.12-1; RCOM_1325310; VITISV_031171;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G65060.1	4CL3 4-coumarate:CoA ligase 3 chr1:24167385-24171457 REVERSE LENGTH=561	2.0e-12	65%
RefSeq	Arabidopsis thaliana	NP_176686.1	4-coumarate--CoA ligase 3 [Arabidopsis thaliana]	2.0e-12	65%
RefSeq	Populus trichocarpa	XP_002325815.1	4-Coumarate:CoA ligase [Populus trichocarpa]	1.0e-10	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C1KBY2

Fln msg: your sequence is shorter than subject: 60 - 537

Fln protein: RRDLGCHSFVVRSGDGIDLTVNEIKEFVAKQVVFYKKLHNVYFIEAIPKSPSGLCCARI*

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTGGTGAGATCCGGTGATGGGATTGATTTAACGGTGAATGAGATTAAAGAATTCGTTGCCAAACAGGTGGTGTTCTACAAGAAGCTGCACAACGTTTATTTTATAGAAGCCATACCCAAATCTCCGTCTGGCCTTTGCTGCGCCAGGATTTAA___GAGCCAAGCTTATGGCTGTCGCTGCAGGCATTCAATAGTTTCAGCGGCCATGGCAGAAGGAGCCTTATCTGCTTTTATATTAAAATATATACAGATTTTGTGTATTTTCTGGTGTCTCGCCAGCAGGATTGACCTTGTAGTGTAAGTTGTGAAAGTTTACTTATTCATTTATTTCCTCGTTCATTTTTAGCTGGCCTGAGATGACTCTGGACATGTTTCTAATTATAGTGTTGCTGCTGCCATGGTACGCATGGCATGACATGACAGAGTTGTTGTCTAGTTTATTCCTA

Fln Alignment:

Contig21120___SFVVRSGDGIDLTVNEIKEFVAKQVVFYKKLHNVYFIEAIPKSPSG
C1KBY2_______________AFVVKSSE---ISEQEIKEFVAKQVVFYKKIHRVYFVDAIPKSPSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain