SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21116

Length: 410 nt

UniGene Fasta

>sp_v3.0_unigene21116
ATGGGGGCTTGCAGTTCTTTCAACATTGAGGGAGAGGCAGAACGAACGCGGAACGCGGAAGAACCGATTGAACGAGCGTTTGCTGGTTCTGGTCTCGTTCCAGTTTTTGGGGTTGACTGGTTCCAGTTCTAATGGTGGTGGATACCAGCACTGCTGGACAATTGTTTGATTGCCTACATTGGTTTTCAGCTCAAAAGAAAATGACGGAGCCGCCCTTTGTTCCAAGGGACTATGTGTTGAGGAAGCAACAATATTACCAAAATATTCGGAAACATACATACTTGAAGGGACCATATGATAAGATCACCTCTGTGGCTATTCCAATTACACTGGCAGTTACAGCACTTTCCATGATTGGTCGAGGTATTTACAATATGTCCCATGGGATAGGAAAGAAGGAATGAGCAATG

Ace file of the UniGene sp_v3.0_unigene21116

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acytochrome-c oxidase/ electron carrier [Arabidopsis thaliana] gb\|AAL11546.1\|AF424552_1 unknown protein [Arabidopsis thaliana] gb\|AAL31929.1\|AF419597_1 unknown protein [Arabidopsis thaliana] gb\|AAL38624.1\|AF446891_1 At4g21108/At4g21108 [Arabidopsis thalia	-	-	2.0e-19	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	COX VIIa-like protein	-	-	3.258e-12	-

Source	Gene names
Sma3	At4g21105; At4g21105/F7J7.1; GSVIVT00022060001; GSVIVT00024494001; OJ1316_A04.115; Os02g0162000; Os07g0647500; OsI_05956; OsI_27104; OsJ_05482; OsJ_18790; OsJ_25365; P0503D09.132; POPTRDRAFT_642604; POPTRDRAFT_823133; RCOM_0792900; VITISV_004800;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial respiratory chain	GO:0005746	Cellular Component	-
Sma3	cytochrome-c oxidase activity	GO:0004129	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome c oxidase, subunit VIIa	IPR003177	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G21105.1	" cytochrome-c oxidases;electron carriers chr4:11266273-11266724 FORWARD LENGTH=68"	7.0e-27	68%
RefSeq	Arabidopsis thaliana	NP_567619.1	Acytochrome-c oxidase/ electron carrier [Arabidopsis thaliana]	1.0e-26	68%
RefSeq	Populus trichocarpa	XP_002317076.1	predicted protein [Populus trichocarpa]	6.0e-28	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRV8

Fln msg: your sequence is shorter than subject: 91 - 126

Fln protein: MVVDTSTAGQLFDCLHWFSAQKKMTEPPFVPRDYVLRKQQYYQNIRKHTYLKGPYDKITSVAIPITLAVTALSMIGRGIYNMSHGIGKKE*

Protein Length: 92

Fln nts: ATGGGGGCTTGCAGTTCTTTCAACATTGAGGGAGAGGCAGAACGAACGCGGAACGCGGAAGAACCGATTGAACGAGCGTTTGCTGGTTCTGGTCTCGTTCCAGTTTTTGGGGTTGACTGGTTCCAGTTCTA_-_ATGGTGGTGGATACCAGCACTGCTGGACAATTGTTTGATTGCCTACATTGGTTTTCAGCTCAAAAGAAAATGACGGAGCCGCCCTTTGTTCCAAGGGACTATGTGTTGAGGAAGCAACAATATTACCAAAATATTCGGAAACATACATACTTGAAGGGACCATATGATAAGATCACCTCTGTGGCTATTCCAATTACACTGGCAGTTACAGCACTTTCCATGATTGGTCGAGGTATTTACAATATGTCCCATGGGATAGGAAAGAAGGAATGA___GCAATG

Fln Alignment:

Contig21116___FSAQKKMTEPPFVPRDYVLRKQQYYQNIRKHTYLKGPYDKITSVAIPITLAVTALSMIGRGIYNMSHGIGKKE
A9NRV8_______________FQLQKKMTEPPFVPRDYVFRKQQYYQNIRKHTYLKGPYDKITSVVIPITLAVTALSMIGRGIYNMSHGIGKKE

SNPs (tot: 3)

Position	A %	G %	T %	Probability
197		87	12	0.992554
212	42	57		1.0
234	20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain