SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21109

Length: 1420 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21109

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00656, Peptidase_C14, Caspase domain	-	-	3.0e-24	29%
FL-Next	tr=Metacaspase type II; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	40%
Sma3	Metacaspase type II	-	-	1.178e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	9.827e-11	-

Source	Gene names
Sma3	AMC4; AMC5; AMC6; AMC7; AMC9; At1g79320; At1g79330; At1g79340; At5g04200; F21E1.120; GSVIVT00002116001; GSVIVT00023336001; LAR; LOC_Os11g04010; MCA1; MtrDRAFT_AC149134g24v2; Os11g0134700; OsI_04084; OsI_34992; OsJ_32856; PHYPADRAFT_123059; PHYPADRAFT_1403

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	induction of apoptosis	GO:0006917	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C14, caspase catalytic	IPR011600	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G04200.1	AtMC9, MC9 metacaspase 9 chr5:1153893-1154870 FORWARD LENGTH=325	0.0	47%
RefSeq	Arabidopsis thaliana	NP_196040.1	metacaspase 9 [Arabidopsis thaliana]	0.0	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q70VV0

Fln msg: your sequence is shorter than subject: 358 - 418

Fln protein: MAKRKYAVLVGCNYPNTENELQGCVNDVMRMQHALIHRFGFGKRNINLLIDTDEAYIKPTGENIRAALLAMVHRAKSGDVLFFHYSGHGTLARMHKSSRSDECIVPCDFNLLTDEDFRFIVNKVPLGATFTMVSDSCHSGGLIDKEKEQIGPHVHSRSLTDLEKSAQHSSKSKFLSLDSLLKILREKTGEAEMEAHKIAIALFQLFGDKASSKVKRILNTNGSVVKAEKGVKKSHVDDHEELQQRIDEDMGILLSGCQTNQTSADACPTGDPKEAYGAFSNAIQTILEQHGKPISNRELVLGTRKSLVKEGYSQHPCLYCSDNNADAAFLCEESTKRNSHSIHHKIDGKNHKKNKMN*

Protein Length: 359

Fln nts: GTTTTATTAGTTAAGGCTGGTTCCGGGAAGAAGTTTCTCCAGGAATCGTGAAAGTGAAGGATACTCTTTCAATATTAATTTACTCCCCATCTCAAACAATTCACTACAAATATACGCCCATCTCGCCCTCTTGGTTTCAAAATTATTCAGCTTCTTATCAAGCTTTCTTGCTGTCAAGAAGTTAGCTGTCAGGATTTTGACA_-_ATGGCCAAACGAAAATACGCTGTGCTAGTGGGATGCAATTATCCCAACACAGAAAATGAACTTCAAGGATGTGTAAACGACGTTATGAGGATGCAACACGCGCTCATTCATCGCTTCGGCTTTGGCAAACGGAACATCAATCTCCTTATCGACACCGATGAAGCGTATATAAAGCCCACAGGCGAAAACATTCGTGCGGCTTTGCTCGCCATGGTTCACCGTGCCAAATCCGGAGACGTCCTCTTCTTTCACTACAGCGGCCATGGCACTCTCGCTCGCATGCATAAGTCCTCCCGCTCTGACGAATGTATCGTCCCATGCGATTTCAATCTTCTTACAGATGAGGACTTCAGGTTTATAGTGAATAAGGTGCCTCTGGGGGCAACCTTCACCATGGTGTCGGACTCCTGTCACAGTGGAGGCCTAATTGACAAAGAGAAGGAGCAAATTGGTCCTCATGTTCATTCGAGATCATTAACAGATCTAGAAAAATCAGCGCAACATTCTTCAAAGAGCAAGTTCTTGTCTTTGGACTCGTTACTGAAAATCTTAAGAGAAAAGACTGGAGAAGCTGAAATGGAGGCTCATAAAATCGCAATCGCTCTCTTTCAGCTTTTCGGTGACAAAGCCAGCTCCAAAGTTAAGAGGATTCTTAACACAAATGGCTCTGTCGTGAAGGCCGAAAAGGGAGTGAAGAAAAGCCATGTGGATGATCATGAGGAGCTGCAGCAGCGTATAGATGAGGACATGGGTATTCTATTGAGTGGATGCCAAACTAACCAGACATCTGCGGACGCCTGCCCTACAGGTGATCCCAAGGAAGCGTATGGAGCATTCAGTAACGCAATTCAGACAATTCTTGAACAGCACGGGAAGCCCATCAGCAACAGGGAATTGGTTTTGGGTACAAGAAAATCGCTTGTGAAAGAAGGGTACTCACAGCATCCGTGTCTGTACTGCAGTGACAACAACGCCGATGCTGCTTTCCTGTGCGAGGAATCCACGAAAAGGAATTCTCACAGCATCCATCATAAGATTGATGGTAAGAATCATAAAAAGAATAAAATGAATTAG___GACAGGATTTGTATATATAATTTGCTGATTGACATTTGCCCTGCAACATGACCTCAATATAGATCTGCAATGTGTGTTTGCTTCGTGATTTTTATTGTAAAGTACTATTATTCTAAATAAAAAGTAGACAGTCTACCAAAAAAA

Fln Alignment:

Contig21109___KYAVLVGCNYPNTENELQGCVNDVMRMQHALIHRFGFGKRNINLLIDTDEAYIKPTGENIRAALLAMVHRAKSGDVLFFHYSGHGTLARMHKSSRSD----ECIVPCDFNLLTDEDFRFIVNKVPLGATFTMVSDSCHSGGLIDKEKEQI------------------------------------GPHVHSR------------SLTDLEKSAQHXXXXXXXXXXXXXXXXREKTGEAEMEAHKIAIALFQLFGDKASSKVKRILNTN--------------GSVVKAEKGVKKSHVDDHE--------ELQQRIDE--------------DMGILLSGCQTNQTSADACPTGDPKEAYGAFSNAIQTILEQHGKPISNRELVLGTRKSLVKEGYSQHPCLYCSDNNADAAFLCE
Q70VV0_______________KKAVLVGCNYPGTKAELKGCVNDVNRMYKCLVERYGFEEENIRVLIDTDDSYPQPTGANVRRALKTLVEGSRAGDIIFFHYSGHGVRLPAETGDKDDTGYDECIVPCDMNLITDDDFREFIDKVPRDCFCTIVSDSCHSGGLIERAKEQIGESTKDGDERPEHKKQGGFGFRDLLSESVHGAFESRGIHLPSRHEHKDRRESDEGETQEIEYHGKGRAKNRSLPLSTLIEILNEKTGRHDIDVGKIRPTLFDMFGDDASPKVKKFVKVLVTKLQSSGNEGGLLGAIGNLAQQFLKQKLDGSDGGSEYVKPALQEEVSSTQEIYAGSGKRGLPDMGILVSGCQSDQTSADANPTGNPAHAYGALSNAIQTILAEHDGPIPNRQLVMKARQILSKQGFAQRPGLYCTDRLANAPFICD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
579	11	88			0.923564
580	11			88	0.923564
581		11	88		0.923564
1287			12	87	0.992554
1288			87	12	0.992554
1292	62		37		1.0
1315			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain