SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21101

Length: 1634 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene21101 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GrpE protein homolog n=1 Tax=Picea sitchensis RepID=A9NWL2_PICSI	-	-	71%
FL-Next	sp=GrpE protein homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Sma3	GrpE protein homolog	-	-	-

Source	GOs	Term	Type	Identity
Sma3	adenyl-nucleotide exchange factor activity	GO:0000774	Molecular Function	-
Sma3	chaperone binding	GO:0051087	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GrpE nucleotide exchange factor	IPR000740	-	-
Sma3	GrpE nucleotide exchange factor, coiled-coil	IPR013805	-	-
Sma3	GrpE nucleotide exchange factor, head	IPR009012	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G26780.1	AR192 Co-chaperone GrpE family protein chr4:13485066-13486560 REVERSE LENGTH=327	56%
RefSeq	Arabidopsis thaliana	NP_567757.1	molecular chaperone GrpE [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002321532.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWL2

Fln msg: your sequence is longer than subject: 362 - 322

Fln protein: MNTSRAITGFLRKGFVQSRGLTIPTAPLISRRCQRVHDISQSPHKWIVSEKMQIFSQSYSICLTPKSSLFSSVASPEVSQKDSNPVSPVEGAVASEGEEIVEPVSQNQEEPKDTAQTQKESNPVSPVEGTVASKGNETVEPISQNQEKPKKTAQTKESDSESEMSSDDEKEISTEDLIRLVQEKEDLLKKKHNEIKVMQEKVLRSYAEVENVMDRARREAESTKKFAIQSFAKSLLDVADNLSRASSVVKESFSKIDPSQDSSGAVPLLKTLLEGVAMTEKHLSDVFKKHGVERFDPINEEFDPHMHMAVFQVQDASKQPGSVAVVLKPGYTLHGRVIRPAEVGVVEAVENEAAGNSEPSA*

Protein Length: 363

Fln nts: ATGGGGAAGATGGGGGCGATTCCTTCAAAAATATAATTGAAAACCTCGAAAGCGTGAATGGTCGACAAAGACGCTGGGACAATTTCGTGGCTCGGCTCCCAGGCCGTAGGCGTTAATGCTACAGTTAACAGCAGGAAAGAACAGCAATTTGTTACATAGTTACGGTAGAAGGCTTCCTACCTGGAAAACAAAGCCTTTTACTTCTTTTAGTACTGTAACTTTGGCGCC_-_ATGAACACTTCCAGAGCTATAACGGGGTTTTTGCGAAAAGGTTTTGTTCAATCTAGGGGCTTAACGATCCCCACCGCTCCTCTGATCTCGCGAAGATGCCAGAGAGTACATGATATCAGTCAGTCGCCACACAAGTGGATTGTGAGTGAAAAAATGCAAATATTTTCTCAATCCTATTCTATATGTTTAACTCCCAAGTCATCTCTTTTCTCCTCTGTTGCATCACCTGAAGTATCACAGAAGGATTCAAATCCAGTTTCACCTGTGGAGGGTGCAGTTGCTAGTGAAGGCGAGGAAATTGTTGAGCCTGTCAGTCAAAATCAAGAGGAGCCTAAGGATACTGCACAAACACAGAAGGAATCAAATCCAGTTTCACCTGTGGAGGGTACAGTGGCTAGTAAAGGCAATGAAACTGTTGAGCCCATCAGTCAAAATCAGGAGAAGCCTAAGAAAACTGCACAAACAAAAGAGTCAGATTCAGAATCAGAAATGTCATCAGATGATGAGAAAGAAATTTCAACAGAGGATTTAATTAGACTTGTTCAGGAGAAAGAGGATTTATTGAAGAAAAAACACAATGAGATTAAGGTGATGCAGGAGAAGGTTCTTCGGAGTTATGCAGAAGTAGAGAATGTCATGGATAGGGCAAGGCGTGAGGCAGAAAGTACAAAAAAGTTTGCAATACAGAGTTTTGCCAAGAGCCTCTTAGATGTTGCTGATAACTTGTCAAGAGCATCATCTGTTGTTAAAGAAAGCTTTAGCAAGATAGACCCTTCCCAAGATTCAAGTGGAGCAGTGCCACTACTGAAAACACTTTTGGAAGGGGTGGCGATGACTGAAAAGCATCTTTCAGATGTGTTTAAAAAACACGGAGTTGAAAGGTTTGATCCAATAAATGAAGAGTTTGATCCTCATATGCACATGGCAGTATTTCAAGTTCAAGATGCTAGTAAGCAGCCTGGCAGCGTGGCTGTGGTTTTGAAGCCTGGCTATACACTTCATGGCAGAGTAATACGTCCTGCCGAGGTTGGTGTTGTGGAGGCTGTCGAAAATGAAGCTGCGGGAAATTCTGAGCCATCTGCCTGA___TTTGGAGTTGATCATTCTTTTCTTCTTAATTCTTGTAGGATATCTGAAGCAGCATTGAATTCCTTGCACAGTAAAGATATCTGATTTAGAATGTAGATTTAGATGGTAGGCTTTTTGCTTCTCTGTCTATGAGATTGCATCAACGTCTCCATTCTATATTTATTTCATGAACACAATTGCACTTGCAGTAGAACGGTGAGGGTAATTTTTTCCAGAGAAAATTTGTCAGGCTTTTTATAGCATAATTTTGAGTATACAACACCTTTCAAGCTGGTGCAAATATAAAAAATATCTTGTCCAATTCCTTATGTTTAGTGTAG

Fln Alignment:

Contig21101___MNTSRAITGFLRKGFVQSRGLTIPTAPLISRRCQRVHDISQSPHKWIVSEKMQIFSQSYSICLTPKSSLFSSVASPEVSQKDSNPVSPVEGAVASEGEEIVEPVSQNQEEPKDTAQTQKESNPVSPVEGTVASKGNETVEPISQNQEKPKKTAQTXXXXXXXXXXXXXXXEISTEDLIRLVQEKEDLLKKKHNEIKVMQEKVLRSYAEVENVMDRARREAESTKKFAIQSFAKSLLDVADNLSRASSVVKESFSKIDPSQDSSGAVPLLKTLLEGVAMTEKHLSDVFKKHGVERFDPINEEFDPHMHMAVFQVQDASKQPGSVAVVLKPGYTLHGRVIRPXXXXXXXXXXXXXXXNSEPSA
A9NWL2_______________MNTSRAVTGFLRKCLLQSRSLTVPTAPLVSRRCQTVHDIIQSPHKWIASEKMQFFSQPRSICLTPKSSLFSSVASPEVSQK--------------------------------------ESNPVSSVESTVASKGEEIVEPVSQNQE-PKKAAQRKESDSESEISSDEEKELSIEDLIRLVQEKELLLKEKHKEIKVMQEKVLRSYAEVENVMDRARREAESTKKFAIQSFAKSLLDVADNLSRASSVVKESFSKIDPSKDSSGAAPLLKTLLEGVAMTEKQLSDVLKKHGVERFDPLNEQFDPNMHMAVFQVQDASKQTGSVAVVLKPGYTLHDRVIRPAEVGVVEGVESEVAGNSEPSA

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
335		77		22	1.0
521		87	12		0.992554
523	87			12	0.992554
524	87		12		0.992554
525	12	87			0.992554
527	12			87	0.992554
528			12	87	0.992554
529		12		87	0.992554
533		85	14		0.993533
538		20		80	0.995493
1404	25	75			0.996473
1408			75	25	0.996473
1569	5	11	77		0.999842
1570		11		88	0.999937
1572		16	83		1.0
1574		88		11	0.999937
1603	88	11			0.923564
1604		11		88	0.923564
1605		11		88	0.923564
1606	11			88	0.923564
1620	20	80			0.995493
1622		75	25		0.996473
1623	25	75			0.996473
1625	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain