SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21087

Length: 855 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21087

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phospholipase C [Arabidopsis thaliana] gb\|AAM74513.1\| At1g07230/F10K1_4 [Arabidopsis thaliana] dbj\|BAC22506.1\| phosphatidylglycerol specific phospholipase C [Arabidopsis thaliana] gb\|AAW80856.1\| At1g07230 [Arabidopsis thaliana] gb\|AEE28095.1\| phospholipas	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Phosphatidylglycerol specific phospholipase C	-	-	1.498e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase C.	EC:3.1.4.3	-	3.495e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Inositol phosphate metabolism	00562	3.495e-08	%
Sma3	Glycerophospholipid metabolism	00564	3.495e-08	%
Sma3	Ether lipid metabolism	00565	3.495e-08	%
Sma3	Metabolic pathways	01100	3.495e-08	%

Source	Gene names
Sma3	At1g07230; At2g26870; At3g03520; At3g03530; At3g03540; At3g48610; B1139B11.14-1; F10K1.6; GSVIVT00000809001; GSVIVT00017959001; GSVIVT00022270001; GSVIVT00024115001; LOC_Os03g61130; LOC_Os03g63580; LOC_Os11g38050; OJ1111_B11.8; OSJNBa0010E04.10; OSJNBa001

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	ammonium transmembrane transporter activity	GO:0008519	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	glycolipid biosynthetic process	GO:0009247	Biological Process	-
Sma3	phospholipid catabolic process	GO:0009395	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ammonium transporter	IPR001905	-	-
Sma3	Villin headpiece	IPR003128	-	-
Sma3	Gelsolin	IPR007122	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Phosphoesterase	IPR007312	-	-
Sma3		IPR010256	-	-
Sma3	Ammonium transporter, conserved site	IPR018047	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G07230.1	NPC1 non-specific phospholipase C1 chr1:2220509-2222778 REVERSE LENGTH=533	68%
RefSeq	Arabidopsis thaliana	NP_172203.2	phospholipase C [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002299814.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKC2

Fln msg: Overlapping hits, possible frame ERROR between 140 and 130, your sequence is shorter than subject: 245 - 529

Fln protein: PGNDDHPSKDVGEGQRFVKEVYEVLRSSPQWNEMLFIITYDVxxxxxYDHVPTPVKNVPSPDDIVGPEPYYFKFDRLGVRVPTIMISPWINKGTVVHGPNGPYPSSEFEHSSIPATVKKIFNLKSGFLTKRDAWAGTFEGILQLRDSPRTDCPDQLPEPTKLRPTEAKEDAALNDFQIELVQLAAQLNGDHTLDSYPDELPKKMNVAEACAYAERAVKSFLDAGKTAIKNGEKDWEKIVKLLAG*

Protein Length: 246

Fln nts: GTCCTGGAAATGATGACCATCCGTCCAAAGATGTTGGTGAAGGGCAGAGGTTTGTGAAAGAGGTGTATGAGGTGCTGAGATCGAGTCCCCAGTGGAACGAGATGTTGTTCATTATCACATACGATGTAxxxxxxxxxxxxxxxTACGATCATGTGCCCACGCCTGTGAAAAATGTGCCCTCTCCAGATGATATCGTTGGACCAGAGCCCTATTACTTCAAATTCGACAGACTAGGCGTCCGTGTACCGACTATCATGATTTCCCCTTGGATCAACAAGGGAACAGTGGTACATGGGCCAAATGGACCATATCCTTCCTCCGAATTTGAGCACTCGTCCATCCCTGCAACTGTTAAGAAAATCTTTAATCTGAAGTCAGGGTTTCTGACAAAGAGAGACGCCTGGGCCGGCACTTTTGAAGGCATTTTACAACTTCGGGACAGCCCACGAACAGACTGCCCAGACCAGCTGCCCGAACCGACGAAGCTGAGACCAACGGAGGCTAAGGAAGATGCGGCGTTGAATGATTTTCAGATAGAATTGGTGCAACTGGCAGCTCAATTGAACGGAGATCACACTCTGGATAGCTATCCAGACGAACTCCCTAAGAAAATGAACGTGGCAGAAGCGTGCGCATATGCCGAGCGTGCTGTAAAAAGCTTCCTTGACGCGGGTAAGACTGCCATTAAAAACGGTGAAAAAGATTGGGAAAAGATCGTGAAGCTTCTAGCGGGTTAAGCGCCTGCTTCCGGATGAAGGTTTTTGGAATAAAACCATGGAAGACATTGAATAAAAGACTGGGCGACGGCTCTTTCAGCTTTAAACCATGAGACAGGAGAGAATATGTTGGAGTACATT

Fln Alignment:

Contig21087___PGNDDHPSKDVGEGQRFVKEVYEVLRSSPQWNEMLFIITYDVxxxxYDHVPTPVKNVPSPDDIVGPEPYYFKFDRLGVRVPTIMISPWINKGTVVHGPNGPYPSSEFEHSSIPATVKKIFNLKSGFLTKRDAWAGTFEGILQLRDSPRTDCPDQLPEPTKLRPTEAKEDAALNDFQIELVQLAAQLNGDHTLDSYPDELPKKMNVAEACAYAERAVKSFLDAGKTAIKNGEKDWEKIVKL
B8LKC2_______________PANDDHPSHDVAEGQKFVKEVYETLRSSPQWNQTLFLITYDExxxxFDHVPTPVKDVPSPDDIVGPDPFFFKFDRLGVRVPTIMISPWIDKGTVIHGPNGPYPSSQFEHSSIAATVKKLFNLKSDFLTKRDAWAGTFEDVVQKRSSPRTDCPETLADPPKIRKSEANEEAKISEFQEELVQLAAQLNGDYTLKSYPEEIGKKMNVREAKKYMGDSVRRFFEAGRLAKRLGADDHE-IVKM

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
333	11		88		0.923564
665	75		25		1.0
690		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain