SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21058

Length: 1690 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene21058

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Deoxyhypusine synthase, putative n=1 Tax=Ricinus communis RepID=B9SW18_RICCO	-	-	0.0	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%

Source	ECs	Term	Type	e value	Identity
Sma3	Homospermidine synthase (spermidine-specific).	EC:2.5.1.45	-	0.0	-

Source	Gene names
Sma3	RCOM_0663340;

Source	InterPros	Term	Type	e value	Identity
Sma3	Deoxyhypusine synthase	IPR002773	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05920.1	DHS, EDA22 deoxyhypusine synthase chr5:1777781-1779699 REVERSE LENGTH=368	78%
RefSeq	Arabidopsis thaliana	NP_196211.1	deoxyhypusine synthase [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002304837.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7T0

Fln msg: your sequence is longer than subject: 382 - 127

Fln protein: MGSGPTNSVAAPIDAPEGWPISAHAAAMKSSAKLNDKSTIVSGYDFNQGVDHEKLLLSMLTTGFQASHLGRAIVLVNNMLDWRLSDEPIEEGCSEEERDPAFRESVKCKIFMGFTSNLISSGLRDTIRFLAEHRMVDVLVTTAGGVEEDLIKCLAPTYTGDFSLPGAQLRSNGLNRIGNLLVPNDNYCKFEDWIIPIFDQLLKEQKEQGVVWTPSKVIARLGKEINNPSSYCYWAYKNGIPVFCPGLTDGSLGDMLYFHSFRSPGLLVDIVQDIRAINGEAVHASPQKTGMIILGGGMPKHHICNANMMRNGADYAVYINTAQEFDGSDSGALPDEAVSWGKIRGSATPVKVHCDATIAFPLLVSQTFAKKLNDKCQGSTH*

Protein Length: 383

Fln nts: TATTGGGGGCAGAGCACAGACGCGCACGGGGTCCCTCCTCGTCCCTCCTCTTCTTCACAGTATTCCCGTGCATAGAATAGAAGAGG_-_ATGGGCTCAGGGCCTACTAACAGTGTTGCCGCCCCCATAGATGCACCCGAAGGGTGGCCAATCTCCGCCCATGCTGCAGCCATGAAATCATCGGCGAAACTGAATGACAAATCCACAATAGTGAGTGGGTACGATTTCAACCAAGGAGTTGATCACGAAAAACTTCTCCTGTCAATGTTAACCACGGGTTTCCAGGCTTCTCATCTTGGCCGGGCTATTGTTCTTGTCAATAATATGCTGGATTGGAGGCTAAGCGACGAACCTATTGAAGAAGGTTGCAGCGAGGAAGAAAGGGATCCAGCTTTCAGAGAAAGTGTAAAGTGCAAAATATTCATGGGTTTTACTTCGAACCTCATCTCTTCCGGTCTGCGAGACACTATTCGGTTCTTGGCAGAGCATCGCATGGTTGATGTGCTGGTTACCACGGCAGGAGGGGTTGAAGAAGACCTGATTAAATGTCTAGCACCGACCTATACTGGTGATTTTTCACTACCCGGAGCTCAGTTACGTTCAAATGGATTGAATCGAATTGGTAATCTGTTGGTTCCTAATGACAATTACTGCAAGTTTGAAGATTGGATCATACCCATTTTTGATCAGCTTTTAAAGGAGCAAAAAGAACAGGGTGTGGTTTGGACACCATCAAAGGTGATTGCTCGTCTGGGTAAAGAAATAAATAATCCGAGTTCATACTGTTACTGGGCATACAAGAATGGCATTCCGGTATTTTGTCCAGGTTTAACTGATGGTTCCTTGGGAGATATGCTCTACTTTCACTCCTTCCGCAGTCCAGGGCTTCTTGTTGACATTGTCCAAGACATTAGAGCTATAAATGGTGAAGCTGTTCATGCCAGCCCCCAGAAGACAGGCATGATAATTCTAGGGGGGGGTATGCCCAAGCACCACATTTGCAATGCTAATATGATGCGGAATGGTGCTGACTATGCTGTTTACATTAACACTGCGCAAGAATTTGATGGCAGTGATTCTGGAGCACTACCAGATGAAGCTGTTTCCTGGGGTAAAATCAGGGGATCTGCTACTCCTGTCAAGGTTCATTGTGATGCAACAATCGCTTTTCCTTTGCTAGTATCTCAAACGTTTGCAAAAAAGCTAAATGACAAGTGCCAAGGGAGTACTCATTAA___AAGCAAGGATATTGTTATGGCCATTCTAAGGTTAATTTCTTGTGCTATATTGGATTCCTTGCATCCCTAATATTCACGCTCTTTGAAAAATATCCCTTGGATTTACTTATTCAACCAAGTAGGAGTGATATTTCTCTTTACATGGTTTTGTTTTATACCAAAAGAGCATATCTAGTATGCCACTTTAGGTACATTTCTATCTTTGTTTCCCTTCATATGAGTACTTGGTTTTGGAATGCTTTACGGAATTCACACCCTGTTAAAAGTTGAAACATATCTTGAAGTGTTTAGCAGAGGCCTATTTTAATCTCTCAGGCTTTGATATAAAATGCGTATGTGGTTCTTTGACTGAGCATTTGCTGTGGGGATTTAACTTTTATTTTTTACACCAAGGAGCTAATATACTCAGTATGCTCCTGTATTTGAAGTCTTACACAGTTTGGTTCTACTTAGACTAC

Fln Alignment:

Contig21058___MLYFHSFRSPGLLVDIVQDIRAINGEAVHASPQKTGMIILGGGMPKHHICNANMMRNGADYAVYINTAQEFDGSDSGALPDEAVSWGKIRGSATPVKVHCDATIAFPLLVSQTFAKKLNDKCQGSTH
D5A7T0_______________MLYFHSFRSPGLVVDIVQDIRAINGEAVHASPRKTGMIILGGGIPKHHICNANMMRNGADYAVYINTAQEFDGSDSGALPDEAVSWGKIRGSATPIKVHCDATIAFPLLVSQTFAKKINEKFKGNTH

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
636	33		66		0.997452
637	33			66	0.997452
639		66	33		0.997452
643	33	33			0.997753
978	20		80		0.995493
1040	14	85			0.993533
1042		16	83		0.994512
1043	16		16	66	0.988813
1115		20	80		0.995493
1116		20		60	0.99255
1194	20		80		0.995493
1260		33	33		0.997753
1294	66		33		0.997452
1298		66	33		1.0
1300		33		66	1.0
1302		66		33	1.0
1303	66		33		1.0
1304	33			66	1.0
1307		66		33	1.0
1309	66		33		1.0
1310	66		33		1.0
1311		33		66	1.0
1312	66			33	1.0
1313			33	66	1.0
1317		50	50		1.0
1318			50	50	1.0
1319		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain