SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene21056

Length: 2321 nt

UniGene Fasta

>sp_v3.0_unigene21056
ACAGTTGTTTGCCTTCCCAACACCACTCAGAAAACGCTGACTCCGTCATCACGTCTGATGCCGTGCGCTCCCGATAAATCTGACTGACGGAAACTTCCTGTCCACGTTGCCAACTATACCATGGATTCTTTTTCAGGTTTTCTTGTACGTCTCAAACAGCGCAGCATTCGTCGCCGTTAAGCAAAGATATACCACAAGGGCCGAGAGTCGAACGCCGGTCTATATAAAACCCCAGCTTACACAGAAAAACTCCGAGATCCTGTTGTAGCGAACGAACTTGCAAAAGGAGATGAAGATGAGAACATTTGTTCTGTTGCTGTTGCTGTGTTTATGCATATCTCCGTCATTTGCCGATTTACGGCTCCCCACGAGTGCCAGGTTCCCTCAAGCTCAGGCCGAACGGCTGATTAAAGAGCTGAATTTGATTCCGGGAATCGCAGAACCGCAAGAGGAATACGACGTCGGCCCTCGTTTGGTTGAAAGGAGTATCAATTTGGATATTAATGGGGACTCCGAAAAGACCGCCGGCATCGAAGAACTCGGTCATCATGCCGGATATTTTCGCCTCGAACACACGCATGCTGCGAAGATGTTCTACTTCTTCTTCGAGTCACGGGGAAGCAAAGCGGATGACCCTGTTGTTCTTTGGATGACTGGAGGCCCTGGTTGTAGCAGTGAATTGGCTGTCTTCTATGAAAATGGGCCTTTCAAGATTACAGACAATTTAACTCTGGTCTGGAATGAGTATGGATGGGACAAGGCATCAAATCTCATTTTTGTGGATCAACCTACTGGAACCGGTTTTAGTTACAGCACTGATGTACGTGACCTCCGTCACGATGAGAAGGGTGTTGGTAATGATATGTATGACTTTCTACAGGCATTTTTCAAAGAACACCCAGAGTATGCAAAGAATGACTTCTTCATCACTGGAGAGTCATATGCTGGACACTACATTCCGTCAGTTACAAGCAGGGTCAACCAAGGAAACAAAGACAATGAGGGTCTTCCAATAAATTTGAAGGGATTTGCCATTGGTAATGGACTTACTGATCCAGCAATCCAGTATAAAGCATACACAGATTATGCGTTGGAGATGGGTCTAATCGGGGAAGATGATTACAATCGGATCAACAAAATCTATCCGGCATGTGAATTGTCCATAAAACTTTGTGGTACCAAAGGGACTGTCACATGCTTTGCATCATACTTGGTGTGCACCTCAATTTTCAATTCCATTATGGCATTAGCTGGGAATATCAATTACTATGATGTTCGGAAGGAGTGCAATGGTGGCCTGTGCTATGATTTTTCAAATATGGAGAATTACTTAAACCAGGGTTCCGTTAGGGATGCCCTGGGGGTTGGCAGCCGAAAATTTGTCTCCTGTAGTCCCTTGGTTTATGAAGCTATGCTTACTGACTGGATGCGAAATATGGAAGTTGGCATTCCAACACTCTTGGAGGATGGTGTCAAGTTGCTAGTTTATGCAGGAGAATATGATCTCATTTGCAATTGGTTAGGCAATTCAAGATGGGTGAATTCCATGGATTGGTCTGGAAGTGAGAATTTCAAGAAGGCACCGACAAAATCCTTCCTTGTAGACGATAAGGAAGCAGGTTTAATAACCAGTTATGGACCACTCAGTTTTCTCAAGGTTCATGATGCAGGTCATATGGTCCCAATGGATCAGCCAAAAGCAGCCTTGGAGATGTTAAAACGCTGGACACAAGGAAGTATTACTGAGGACAATTCTCAAATTTTAAAGACAGTGACGGAGATGCCAGAGAAGAATTTCGAGAGTTAGTTATCTGCTTAACTAGGAGAATTGCTCTCTTCATCTAGATTAATGTAAATATCTCTAGATTTGCAGTAGTGTGCATCCCCAAAGATGTGTATTTTCTGATTTGGCAAAATAATTGTGCATGGGACCATCAGTCTTGCTAGCTTGTGGCAAATCTTTTTATGGCCTCTCTTTAACTGTATAGAAATAGTGCTTCTTATTGCTTACCAAGCCTGGTGGAATTATGATTATACATGGTGTTAAAGTTATATATATATTCAAGAACATGAATATTATGTCCTGTGTTCTTATTCCTGCATGTTCTGATGTCCTTCTGATGTCCTAATGGATGAAAGAAATTGTAAATTCAACAAAAATATTTGGTCGAGTCTCGGGGAATTCAAAGCATGATGCTCTTAGCCTACATTCAATTTTATTTTCAATGACATGAAAACATTTATGTTGTTTGCAAACATCCAACGGATGCCAGTATTGTCTACTTATATTTGAATTGGAGGCAATGTGGTTTGGCTGTGTT

Ace file of the UniGene sp_v3.0_unigene21056

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative serine carboxypeptidase n=1 Tax=Gossypium hirsutum RepID=Q8VWQ0_GOSHI	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10410.1	SCPL49, CPY SERINE CARBOXYPEPTIDASE-LIKE 49 chr3:3235518-3238063 REVERSE LENGTH=516	66%
RefSeq	Arabidopsis thaliana	NP_187652.1	carboxypeptidase [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002311071.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLM6

Fln msg: your sequence is longer than subject: 506 - 405

Fln protein: MKMRTFVLLLLLCLCISPSFADLRLPTSARFPQAQAERLIKELNLIPGIAEPQEEYDVGPRLVERSINLDINGDSEKTAGIEELGHHAGYFRLEHTHAAKMFYFFFESRGSKADDPVVLWMTGGPGCSSELAVFYENGPFKITDNLTLVWNEYGWDKASNLIFVDQPTGTGFSYSTDVRDLRHDEKGVGNDMYDFLQAFFKEHPEYAKNDFFITGESYAGHYIPSVTSRVNQGNKDNEGLPINLKGFAIGNGLTDPAIQYKAYTDYALEMGLIGEDDYNRINKIYPACELSIKLCGTKGTVTCFASYLVCTSIFNSIMALAGNINYYDVRKECNGGLCYDFSNMENYLNQGSVRDALGVGSRKFVSCSPLVYEAMLTDWMRNMEVGIPTLLEDGVKLLVYAGEYDLICNWLGNSRWVNSMDWSGSENFKKAPTKSFLVDDKEAGLITSYGPLSFLKVHDAGHMVPMDQPKAALEMLKRWTQGSITEDNSQILKTVTEMPEKNFES*

Protein Length: 507

Fln nts: ACAGTTGTTTGCCTTCCCAACACCACTCAGAAAACGCTGACTCCGTCATCACGTCTGATGCCGTGCGCTCCCGATAAATCTGACTGACGGAAACTTCCTGTCCACGTTGCCAACTATACCATGGATTCTTTTTCAGGTTTTCTTGTACGTCTCAAACAGCGCAGCATTCGTCGCCGTTAAGCAAAGATATACCACAAGGGCCGAGAGTCGAACGCCGGTCTATATAAAACCCCAGCTTACACAGAAAAACTCCGAGATCCTGTTGTAGCGAACGAACTTGCAAAAGGAG_-_ATGAAGATGAGAACATTTGTTCTGTTGCTGTTGCTGTGTTTATGCATATCTCCGTCATTTGCCGATTTACGGCTCCCCACGAGTGCCAGGTTCCCTCAAGCTCAGGCCGAACGGCTGATTAAAGAGCTGAATTTGATTCCGGGAATCGCAGAACCGCAAGAGGAATACGACGTCGGCCCTCGTTTGGTTGAAAGGAGTATCAATTTGGATATTAATGGGGACTCCGAAAAGACCGCCGGCATCGAAGAACTCGGTCATCATGCCGGATATTTTCGCCTCGAACACACGCATGCTGCGAAGATGTTCTACTTCTTCTTCGAGTCACGGGGAAGCAAAGCGGATGACCCTGTTGTTCTTTGGATGACTGGAGGCCCTGGTTGTAGCAGTGAATTGGCTGTCTTCTATGAAAATGGGCCTTTCAAGATTACAGACAATTTAACTCTGGTCTGGAATGAGTATGGATGGGACAAGGCATCAAATCTCATTTTTGTGGATCAACCTACTGGAACCGGTTTTAGTTACAGCACTGATGTACGTGACCTCCGTCACGATGAGAAGGGTGTTGGTAATGATATGTATGACTTTCTACAGGCATTTTTCAAAGAACACCCAGAGTATGCAAAGAATGACTTCTTCATCACTGGAGAGTCATATGCTGGACACTACATTCCGTCAGTTACAAGCAGGGTCAACCAAGGAAACAAAGACAATGAGGGTCTTCCAATAAATTTGAAGGGATTTGCCATTGGTAATGGACTTACTGATCCAGCAATCCAGTATAAAGCATACACAGATTATGCGTTGGAGATGGGTCTAATCGGGGAAGATGATTACAATCGGATCAACAAAATCTATCCGGCATGTGAATTGTCCATAAAACTTTGTGGTACCAAAGGGACTGTCACATGCTTTGCATCATACTTGGTGTGCACCTCAATTTTCAATTCCATTATGGCATTAGCTGGGAATATCAATTACTATGATGTTCGGAAGGAGTGCAATGGTGGCCTGTGCTATGATTTTTCAAATATGGAGAATTACTTAAACCAGGGTTCCGTTAGGGATGCCCTGGGGGTTGGCAGCCGAAAATTTGTCTCCTGTAGTCCCTTGGTTTATGAAGCTATGCTTACTGACTGGATGCGAAATATGGAAGTTGGCATTCCAACACTCTTGGAGGATGGTGTCAAGTTGCTAGTTTATGCAGGAGAATATGATCTCATTTGCAATTGGTTAGGCAATTCAAGATGGGTGAATTCCATGGATTGGTCTGGAAGTGAGAATTTCAAGAAGGCACCGACAAAATCCTTCCTTGTAGACGATAAGGAAGCAGGTTTAATAACCAGTTATGGACCACTCAGTTTTCTCAAGGTTCATGATGCAGGTCATATGGTCCCAATGGATCAGCCAAAAGCAGCCTTGGAGATGTTAAAACGCTGGACACAAGGAAGTATTACTGAGGACAATTCTCAAATTTTAAAGACAGTGACGGAGATGCCAGAGAAGAATTTCGAGAGTTAG___TTATCTGCTTAACTAGGAGAATTGCTCTCTTCATCTAGATTAATGTAAATATCTCTAGATTTGCAGTAGTGTGCATCCCCAAAGATGTGTATTTTCTGATTTGGCAAAATAATTGTGCATGGGACCATCAGTCTTGCTAGCTTGTGGCAAATCTTTTTATGGCCTCTCTTTAACTGTATAGAAATAGTGCTTCTTATTGCTTACCAAGCCTGGTGGAATTATGATTATACATGGTGTTAAAGTTATATATATATTCAAGAACATGAATATTATGTCCTGTGTTCTTATTCCTGCATGTTCTGATGTCCTTCTGATGTCCTAATGGATGAAAGAAATTGTAAATTCAACAAAAATATTTGGTCGAGTCTCGGGGAATTCAAAGCATGATGCTCTTAGCCTACATTCAATTTTATTTTCAATGACATGAAAACATTTATGTTGTTTGCAAACATCCAACGGATGCCAGTATTGTCTACTTATATTTGAATTGGAGGCAATGTGGTTTGGCTGTGTT

Fln Alignment:

Contig21056___MFYFFFESRGSKADDPVVLWMTGGPGCSSELAVFYENGPFKITDNLTLVWNEYGWDKASNLIFVDQPTGTGFSYSTDVRDLRHDEKGVGNDMYDFLQAFFKEHPEYAKNDFFITGESYAGHYIPSVTSRVNQGNKDNEGLPINLKGFAIGNGLTDPAIQYKAYTDYALEMGLIGEDDYNRINKIYPACELSIKLCGTKGTVTCFASYLVCTSIFNSIMALAGNINYYDVRKECNGGLCYDFSNMENYLNQGSVRDALGVGSRKFVSCSPLVYEAMLTDWMRNMEVGIPTLLEDGVKLLVYAGEYDLICNWLGNSRWVNSMDWSGSENFKKAPTKSFLVDDKEAGLITSYGPLSFLKVHDAGHMVPMDQPKAALEMLKRWTQGSITEDNSQILKTVTEMPEKNFE
B8LLM6_______________MFYFFFESRGSKADDPVVLWMTGGPGCSSELAVFYENGPFKITDNLTLAWNEYGWDKASNLIFVDQPTGTGFSYSTDVRDLRHDEKGVSNDMYDFLQAFFKEHPEYAKNDFFITGESYAGHYIPAVTSRVHQGNKDSEGLPINLKGFAIGNGLTDPAIQYKAYTDYALEMGLIGEDDYNRINKIYPACELSIKLCGTKGTVSCFASYLVCNSIFNSIMALAGNINYYDVRKECNGGLCYDFSNMENYLNQGSVRDALGVGSRKFVSCSPLVYEFMLTDWMRNMEVGIPTLLDDGVKLLVYAGEYDLICNWLGNSRWVNSMDWSGSENFKQASTKSFLVDDKEAGLITSYGSLSFLKVHDAGHMVPMDQPKAALEMLKRWTQGSITDDNSQILKTVTEMPEKSFQ

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
367		66	33		0.997452
370	66		33		0.997452
371		66		33	0.997452
372			66	33	0.997452
374	33		66		0.997452
378	33	66			0.997452
380	33		66		0.997452
384	33	66			0.997452
1325	33		33		0.997753
1601	12			87	0.992554
1604			12	87	0.992554
1605	87		12		0.992554
1618			88	11	0.923564
1620	88		11		0.923564
1621			88	11	0.923564
1624			11	88	0.923564
2001	16			83	0.994512
2002	16	83			0.994512
2074	7		88		0.999079
2077	11			88	1.0
2126	2			69	1.0
2127	2	69			1.0
2158	82	17			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain