SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20944

Length: 1172 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20944

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Xyloglucan endotransglycosylase	-	-	3.557e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	-

Source	Gene names
Sma3	19-1-5; AoXET1; AoXET2; At1g11545; At2g06850; At3g23730; At4g03210; At4g14130; At4g30270; At4g37800; At5g13870; At5g48070; At5g57530; At5g57540; At5g57550; At5g65730; EXGT; EXGT-A1; EXGT-A4; EXGT-A5; EXGT-A6; EXGT-N2; EXT; FCAALL.173; GSVIVT00003361001; G

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	response to low light intensity stimulus	GO:0009645	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G03210.1	XTH9 xyloglucan endotransglucosylase/hydrolase 9 chr4:1416019-1417197 FORWARD LENGTH=290	58%
RefSeq	Arabidopsis thaliana	NP_192230.1	xyloglucan endotransglucosylase/hydrolase protein 9 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002326087.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9T0

Fln msg: W2: There is no M at the beginning,

Fln protein: QQASRVLRNGVASRLKTNYGKRFKHCPCVVGSIVVLCSLIVGSQCAAFNDFFYPSWALDHVMYEGELLKLKLDNTSGAGFASKSTYIFGKVNVQIKLVPGDSAGTVTAFYMSSQGDKHDEFDFEFLGNTSGQPYTVQTNVYSKGNGNREQRMFLWFDPTADFHSYSFLWNRHQVVFFVDDVPVRVFGNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWNHAPFISTYKNFSIDACEYSSKTSCSSWWDEPAYASLDAKQRLKLKWVQEKYMTYDYCKDSVRFATPPPECA*

Protein Length: 299

Fln nts: ACAACAGGCCAGTCGAGTCTTGAGGAATGGCGTTGCAAGCAGGTTGAAAACCAATTACGGAAAGCGTTTCAAGCACTGCCCGTGTGTTGTTGGTAGTATTGTAGTGTTGTGCAGCCTGATAGTGGGCTCTCAATGTGCAGCCTTCAATGATTTCTTCTATCCCAGTTGGGCTCTTGACCATGTTATGTACGAAGGGGAGTTGCTCAAACTTAAGCTCGACAACACTTCTGGTGCAGGGTTTGCCTCCAAGAGCACATACATCTTCGGAAAAGTGAATGTGCAGATTAAGCTCGTTCCTGGCGACTCTGCTGGCACCGTTACTGCTTTCTATATGTCTTCCCAAGGGGATAAGCACGATGAATTTGATTTTGAATTCTTGGGGAACACTTCTGGACAGCCATACACTGTGCAGACCAATGTTTATTCAAAAGGGAATGGCAATAGGGAGCAGCGTATGTTCTTATGGTTCGACCCAACCGCGGATTTCCATTCCTACTCCTTTCTCTGGAATCGCCACCAAGTTGTTTTCTTTGTGGACGATGTGCCGGTTCGGGTATTTGGGAACAATGAGAAAGTAGGAGTCCCTTATCCTCAAACTCAACCCATGGGCGTCTACTCGTCAATATGGAACGCAGACGACTGGGCTACTCAAGGTGGCCTCGTCAAGACCGATTGGAACCACGCGCCTTTCATTTCCACGTACAAAAATTTCAGCATCGATGCATGCGAGTATTCCTCGAAAACGAGCTGCTCTTCGTGGTGGGATGAGCCTGCTTACGCTTCTCTTGATGCAAAGCAGAGGCTGAAACTGAAATGGGTACAAGAGAAATACATGACTTACGATTACTGCAAAGATTCAGTCAGATTTGCCACACCTCCACCAGAGTGTGCATGA___ATTGGCGTTTCCGAACTCCCTCTAATATTCCTTGAGAATGACAATTGTTACCCATTCCTGTCAGCGTGGATAGTGGATGGAAATCCCTTAATTGCAGTGGGAGATTCATTCTTTCTGGAGATCGTGATCGTGATCGTGATGTCCGTTTTTACCAGCATCCTGCACTTAGTTACAGCAGAATATATCCCCATTCTTCCGATAGAAATATTTACAAATCCCGAAAGCTTCTCGTGCTTGAAAGCGTGCGACGTATGCTGCTTGTAAAACAAAAACATTG

Fln Alignment:

Contig20944___GKRFKHCPCVVGSIVVLCSLIVGSQCAAFNDFFYPSWALDHVMYEGELLKLKLDNTSGAGFASKSTYIFGKVNVQIKLVPGDSAGTVTAFYMSSQGDKHDEFDFEFLGNTSGQPYTVQTNVYSKGNGNREQRMFLWFDPTADFHSYSFLWNRHQXXXXXXXXXXXXXGNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWNHAPFISTYKNFSIDACEYSSKTSCSSWWDEPAYASLDAKQRLKLKWVQEKYMTYDYCKDSVRFATPPPECA
D5A9T0_______________GGRIMHWPCVLSSIVMLCSLVVGSQCAAFNDFFYPSWALDHVMYEGELLKLRLDNTSGAGFASKSTYIFGKVNVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYAVQTNVFSKGVGKREQRIFLWFDPTADFHSYSFLWNRQQVVFFVDDVPIRVFLNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYKNFSIDACEYPSTTSCSSWWDQPAYASLDAKQRLKLKWVQEKYMTYDYCRDSGRFATPPAECA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
618		22		77	0.999999
815			66	33	0.997452
823	66			33	0.997452
824			66	33	0.997452
1030		66	33		0.997452
1039		33	33		0.997753

SSRs (tot: 1)

Start position	End position	Sequence	Length
1015	1035	GATCGT GATCGT GATCGT GAT	21

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain