SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20935

Length: 1226 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20935

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fumarylacetoacetase, putative n=1 Tax=Ixodes scapularis RepID=B7Q0D4_IXOSC	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Fumarylacetoacetase	-	-	9.67e-09	-

Source	Gene names
Sma3	At1g12050; CHLREDRAFT_122609; F12F1.8; GSVIVT00010893001; MtrDRAFT_AC150798g15v2; OJ1524_D08.17; Os02g0196800; OsI_06236; OsJ_05754; PHATRDRAFT_50281; PHYPADRAFT_137922; PHYPADRAFT_190260; POPTRDRAFT_652386; RCOM_0670030; VITISV_033628;

Source	GOs	Term	Type	e value	Identity
Sma3	fumarylacetoacetase activity	GO:0004334	Molecular Function	0.0	-
Sma3	aromatic amino acid family metabolic process	GO:0009072	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarylacetoacetase, C-terminal	IPR002529	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Fumarylacetoacetase	IPR005959	-	-
Sma3	Fumarylacetoacetase, C-terminal-related	IPR011234	-	-
Sma3	Fumarylacetoacetase, N-terminal	IPR015377	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G12050.1	fumarylacetoacetase, putative chr1:4072904-4075856 FORWARD LENGTH=421	61%
RefSeq	Arabidopsis thaliana	NP_172669.2	fumarylacetoacetase [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002307870.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABT0

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 64 aas, your sequence is shorter than subject: 327 - 424

Fln protein: MASGSLVSFLNIPKDSHFSMQNLPYGVFRPTPEQQPRPAVAIGEYVLDLSVLARAGLFHGPVLKGSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPVLRDNVELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPENPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPMGTPTPGFGPSVKLDFELxxxxxxxxxxxQPLGPFLGKSFGTSISPWIVTLEALEPFTCEALVQDPPPLTYLTGKSSRTYDIPLEVALKPAGEEKASVICKSNFKHLYWTIEQQLAHHTINGCNLRSGDLLGSGTISG

Protein Length: 328

Fln nts: ATGGGGATCGACATAAAACAATCGTAAAATCTTATCTCCATGACTGACACACCTAAATGTCTTCTTCCATGACTTTCGCAAGCAAATCCTCAGCTCTCAGTTGCGTGTTAAATTACCATATTAGATCCCAGTTGCGTGTTGCTTCACGATACTTGATTATGCTATAGACGCATAAAACCTCAGCAGCTTTAATAGTAGAACAAATAACTTAATTCTGAAAGTAGTGCAGCGGGAAGAGGAGGAATA_-_ATGGCGAGCGGAAGTCTCGTTTCGTTCTTGAACATCCCCAAGGATTCGCATTTTTCAATGCAAAATCTGCCCTATGGAGTGTTCAGGCCTACGCCTGAACAGCAGCCGAGGCCCGCCGTGGCCATTGGCGAGTATGTTTTGGACCTCAGCGTCTTGGCCCGCGCTGGGCTTTTCCATGGCCCTGTGCTCAAGGGTTCCGATTGTTTTCTCCAGCCATCTCTGAATGCTTTCATGGCTATGGGAAAGCCTGCATGGAAGGAGGCACGCGGAACAATTCAGAAACTTTTGTCAGTTGATGAACCAGTCTTGCGAGATAATGTCGAATTGCAGAAAAGTGCATTGTTACCAATGAGTCAGGTTCAGTTGATGCTGCCTGCTGTAATAGGGGACTATACAGACTTCTTTACCTCCAAGTATCATACAATGAACTGTGGAATCATATTTCGTGGTCCTGAAAATCCTCTTCCTCCAAACTGGCTTCATCTTCCAGTTGCATATCATGGGAGAGCATCCTCTGTTGTTATCTCTGGAACAGATCTTCACAGACCTAGAGGTCAAAAACGTCCAATGGGCACACCTACACCAGGATTTGGACCAAGTGTGAAACTTGATTTTGAGCTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAACCACTTGGGCCATTTTTGGGAAAGAGCTTTGGAACAAGCATCTCACCCTGGATTGTCACTCTAGAGGCCTTAGAACCTTTCACCTGTGAAGCACTTGTACAGGATCCACCTCCCCTGACCTATCTCACTGGGAAAAGTAGCAGGACCTATGATATCCCTTTAGAGGTTGCCTTAAAACCAGCCGGGGAAGAGAAAGCTTCTGTTATTTGTAAGAGCAACTTTAAACACCTATATTGGACAATTGAACAACAACTTGCACACCATACCATCAATGGTTGTAATTTGAGGTCTGGAGATTTGCTAGGATCTGGAACCATAAGTGGG

Fln Alignment:

Contig20935___MASGSLVSFLNIPKDSHFSMQNLPYGVFRPTPEQQPRPAVAIGEYVLDLSVLARAGLFHGPVLKGSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPVLRDNVELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPENPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPMGTPTPGFGPSVKLDFELEMQGIYRRGNxxxxxxxxxxxxxxxxxxxxxxxxNARDIQAWEYQPLGPFLGKSFGTSISPWIVTLEALEPFTCEALVQDPPPLTYLTGKSSRTYDIPLEVALKPAGEEKASVICKSNFKHLYWTIEQQLAHHTINGCNLRSGDLLGSGTISG
D5ABT0_______________MASGSLVSFLNIPEDSHFSMQNLPYGVFRPTPEQQPRPGVAIGEYVLDLSALARAGLFHGPVLKGSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPALRDNAELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPESPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPVGKPTPGFGPSAKLDFELEMAMLVGPGNxxxxxxxxxxxxxxxxxxxxxxxxSARDIQAWEYQPLGPFLGKSFGTTVSPWIVTLEALQPFTCEAPVQDPPPLPYLTGKSCRTYDIPLEVALKPAGEDKSSVVCKSNFKHLYWTIEQQLAHHTINGCNLRPGDLLGSGTISG

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
46		66	33		0.997452
47			33	66	0.997452
59	66		33		0.997452
134	25			75	0.996473
137		75	25		0.996473
139			25	75	0.996473
155	20			80	0.995493
158	80		20		0.995493
159			20	80	0.995493
160			20	80	0.995493
204	87		12		0.992554
205	87		12		0.992554
206			12	87	0.992554
583	80		20		0.995493
1018	66	33			0.997452
1113			66	33	0.997452
1114	66			33	0.997452
1115			66	33	0.997452
1116		66	33		0.997452
1118	66		33		0.997452
1119		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain