SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20858

Length: 1532 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20858

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglyceromutase [Chlamydophila abortus S26/3] sp\|Q5L4Y3.1\|GPMA_CHLAB RecName: Full=2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Short=BPG-dependent PGAM; Short=PGAM; Short=Phosphoglyceromutase; Short=dPGM emb\|CAH64312.1\| putative phosph	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Phosphoglycerate mutase	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	intramolecular transferase activity, phosphotransferases	GO:0016868	Molecular Function	0.0	-
Sma3	glycolysis	GO:0006096	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Phosphoglycerate mutase 1	IPR005952	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0J9

Fln msg:

Fln protein: MELLLSNFPKWPWHSSFNSKHRTSRSANLTMACTRVESVTSAGKIAVPSTKSHLVLMRHGESMWNDLKLFTGDVDIPLTENGVMEALASGRSVSEIDFDIIFTSRLVRAKQTALIAMTQSRFKRVPVIVRGGFHGRGKTGDANRLRLRDAAAKALKHASCHMVPVYADPALNERCYGDLQGLSKEAATKEFGEETVMKWRRSYDTRPPHGESLKDTAARSVRFFKSTIIPRLQEHRNVLIVAHGNVLRCIIAHLAGFSEMEMLKLQIVTALPYAYTYDGGTFAECCALPPLDPNRNNDDQQGVPLGISSVFKTGDINSLI*

Protein Length: 322

Fln nts: ATGGGGGCTGTACCCAATAGCAAACCCCCAAAGCCTCGGGGAGGTGCGTTTCCGTATCTTTTTTATCTTACTATCTTACTTCCTCTAAAATGTCTGACTCTTTCAGGTGTACAAATATTTCTGGTTGTCAATTCTTCCTTCTCATTGACTTTTGAGGAACAATAGCTTGTTTTTCTTCTTCTACAATGGAGTCCTCACGTTCCTCACACGGCTCGTCTGATCATCGATATCGCACACGAACTTGAACTTGATCTTCTTCT_-_ATGGAGTTATTATTATCGAATTTTCCGAAATGGCCCTGGCATTCTTCTTTCAATTCCAAGCACCGGACATCTCGGTCAGCAAATTTGACAATGGCATGCACCAGAGTCGAATCTGTGACATCTGCTGGCAAGATTGCGGTCCCGAGTACCAAAAGCCACCTGGTTCTCATGCGCCACGGTGAAAGTATGTGGAATGACTTGAAGCTTTTCACTGGGGATGTGGATATACCCCTTACAGAAAATGGAGTCATGGAAGCTTTAGCTAGTGGTCGTTCTGTTAGTGAAATTGATTTTGACATTATTTTCACCAGTAGATTGGTCCGAGCCAAACAGACAGCCCTTATTGCAATGACTCAGAGCAGATTCAAGAGGGTGCCAGTTATAGTAAGAGGGGGCTTTCATGGGAGAGGGAAGACTGGTGATGCAAATAGGTTACGGCTCCGAGATGCAGCTGCCAAGGCGTTAAAACATGCTTCCTGCCACATGGTTCCAGTTTATGCAGATCCTGCTCTTAATGAACGTTGCTATGGCGATCTCCAGGGATTGAGCAAGGAAGCAGCCACCAAAGAGTTCGGAGAGGAGACTGTTATGAAGTGGAGGAGGAGCTATGATACAAGGCCTCCTCATGGAGAAAGCTTGAAGGATACTGCAGCAAGATCTGTTAGATTTTTCAAGTCGACAATAATCCCAAGGTTACAAGAGCATCGGAATGTGCTAATTGTGGCTCACGGGAATGTTCTTCGTTGTATTATTGCCCACCTAGCTGGGTTTTCAGAGATGGAGATGTTGAAACTTCAGATTGTAACTGCCTTGCCTTATGCGTACACCTATGATGGTGGGACTTTTGCTGAGTGTTGTGCATTGCCTCCTTTGGACCCGAATAGAAATAATGATGATCAGCAAGGAGTCCCTTTGGGCATCTCGTCTGTGTTCAAGACTGGTGATATCAATTCACTTATTTGA___GAGCTGATCTAGTTGAAAGTCCACCCCAGCAATTCGTAAATTATAATCACCGAGGGACATTTTCCTTTCTTTCCTGTAAATTGTATGTTGTCTTAAATAACGTTTATATTATTTGGATCCTAACGTTTTCAATTTCTTTTCGGACCGTTCATAAATTATATTCCCATGTTGGAGAAGTGGGACCGACCTTGTGGGAATTTGACTGTTCAAAATTTGTATCCCCATATTGGAGAAGTGGGGAGCAACCTTGTGGGAAATAATTTTCTAATGCAAAAATGTTTTACAAGGGATGGTCCTTTTGCTCATTCG

Fln Alignment:

Contig20858___MELLLSNFPKWPWHSSFNSKHRTSRSANLTMACTRVESVTSAGKIAVPSTKSHLVLMRHGESMWNDLKLFTGDVDIPLTENGVMEALASGRSVSEIDFDIIFTSRLVRAKQTALIAMTQSRFKRVPVIVRGGFHGRGKTGXXXXXXXXXXXXXXXXXXSCHMVPVYADPALNERCYGDLQGLSKEAATKEFGEETVMKWRRSYDTRPPHGESLKDTAARSVRFFKSTIIPRLQEHRNVLIVAHGNVLRCIIAHLAGFSEMEMLKLQIVTALPYAYTYDGGTFAECCALPPLDPNRNNDDQQGVPLGISSVFKTGDINSLI
A9P0J9_______________MELLLQNFPKWPLYSSFNYKRRTSRPENLTMACTRIETATSAVNISVPSTKSHLVLMRHGESMWNDLKLFTGDVDIPLTENGVMEALASGRAVSEIDFDIIFTSRLVRAKQTALIAMTQSRFKRVPVIVRGGFHGRGKTGDANRLRLRDAAAKALKHASCHMVPVYADPALNERCYGDLQGLSKEAAIKEFGEETVMKWRRSYDTRPPHGESLKDTAARSVRFFKTTIIPRLEEHRNVLIVAHGNVLRCIIAHLAGFSDMEMLKLQIVTAMPYAYTYDGGTFAECCALPPLNPNRNDEDHQGVPLGISSVFKTGDVNSLI

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
60	33			66	1.0
62		33	33	33	0.997753
63			33	66	0.997452
64		33	33	33	0.997753
65	33		33	33	0.997753
100		33		66	0.997452
205	20	80			0.995493
207		80	20		0.995493
208	80		20		0.995493
209		80	20		0.995493
352	73		26		1.0
1383	46		53		1.0
1528			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain