SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20856

Length: 782 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene20856 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxidase [Sesamum indicum]	-	-	9.0e-17	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%

Source	Gene names
Sma3	GSVIVT00020806001; GSVIVT00028909001; POD8; VITISV_006141; VITISV_013676; VITISV_024055;

Source	GOs	Term	Type	Identity
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G24110.1	Peroxidase superfamily protein chr1:8527838-8528818 FORWARD LENGTH=326	7.0e-18	55%
RefSeq	Arabidopsis thaliana	NP_173821.1	peroxidase 6 [Arabidopsis thaliana]	1.0e-17	55%
RefSeq	Populus trichocarpa	XP_002310058.1	predicted protein, partial [Populus trichocarpa]	9.0e-21	55%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
399		14		85	0.993533
570		14		85	0.993533
573	14		85		0.993533
575	14		85		0.993533
578	85			14	0.993533
579	14			85	0.993533
584		14		85	0.993533
669	84			15	1.0
675	84	15			1.0
694		16	83		1.0
737	66	33			1.0
738	66	33			1.0
739	66	33			1.0
740		33	66		1.0
749	25	75			0.996473
757		25		75	0.996473
758	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain