SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20805

Length: 1606 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene20805 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATPPC4 n=2 Tax=Brassicaceae RepID=D7KQT7_ARALL	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Phosphoenolpyruvate carboxylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxaloacetate decarboxylase.	EC:4.1.1.3	-	1.431e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Arginine and proline metabolism	00330		1.431e-06	%
Sma3	Pyruvate metabolism	00620		1.431e-06	%
Sma3	Metabolic pathways	01100		1.431e-06	%
Sma3	Phosphoenolpyruvate carboxylase.	EC:4.1.1.31	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pyruvate metabolism	00620	%
Sma3	Methane metabolism	00680	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Carbon fixation pathways in prokaryotes	00720	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	AT1G53310; At1g53310; At1g68750; At2g42600; At3g14940; B1131G08.12; F12M16.21; F14K14.14; F14N22.13; F24J5.1; GSVIVT00027811001; GSVIVT00030262001; GmPEPC15; GmPEPC7; K15M2.8; LjPEPC1; LjPEPC2; MICPUCDRAFT_31189; MICPUN_104763; Nsppc1; Nsppc2; Nsppc3; OJ1

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	phosphoenolpyruvate carboxylase activity	GO:0008964	Molecular Function	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	carbon fixation	GO:0015977	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001449	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Phosphoenolpyruvate carboxylase, active site	IPR018129	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68750.1	ATPPC4, PPC4 phosphoenolpyruvate carboxylase 4 chr1:25822942-25828104 REVERSE LENGTH=1032	77%
RefSeq	Arabidopsis thaliana	NP_177043.2	phosphoenolpyruvate carboxylase 4 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002314894.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ37

Fln msg: your sequence is shorter than subject: 327 - 1073

Fln protein: AWELYKAQEDVVAACKEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLAQTAVRQLEIYTTAVLLATLHPPDPPRSMNWRGVMEKISETSRQYYRSTVYENEQFLEYFREATPEAELGNLNIGSRPTRRKKSSEIGHLRAIPWIFAWTQTRFVLPAWLGVGAGLEAACAKGYKEELQAMYREWPFFQCTIDLIEMVLAKSDLSIAKHYDEVLVSPSRQKLGEELREAFCMTEKYVLLVSGHEKLTENNKSLKRLIESRLPFLNPINMIQVEILRRLRRDVNNPKLRDALLITINGIAAGMRNTG*

Protein Length: 328

Fln nts: CTGCATGGGAATTATATAAAGCACAGGAAGATGTTGTAGCTGCTTGTAAAGAATTTGGCATTAAAGTTACCCTATTCCATGGCCGTGGAGGAAGTATTGGGCGTGGTGGTGGACCTACATATCTTGCCATTCAATCTCAACCGCCTGGTTCTGTCATGGGAACTCTCCGATCGACAGAGCAGGGAGAAATGGTCCAGGCAAAGTTTGGCTTGGCACAAACAGCAGTGCGACAACTAGAAATCTACACAACTGCTGTTTTGCTCGCAACTTTACATCCGCCAGATCCACCTCGTAGTATGAATTGGCGAGGGGTAATGGAAAAGATATCAGAAACCAGTCGGCAATATTATAGAAGCACTGTTTATGAAAATGAACAGTTTTTAGAGTACTTCCGTGAAGCCACTCCTGAAGCAGAGCTTGGTAATCTAAATATTGGAAGCCGTCCAACAAGGAGGAAAAAGTCTTCTGAGATTGGGCATCTCCGTGCAATTCCTTGGATATTTGCATGGACACAAACCAGATTTGTTTTACCTGCATGGCTTGGTGTTGGAGCAGGCCTCGAAGCAGCCTGTGCAAAAGGATACAAAGAAGAATTACAAGCCATGTACAGAGAATGGCCATTTTTTCAATGCACAATTGATTTAATTGAAATGGTACTTGCAAAGTCAGATTTATCGATTGCTAAGCACTATGATGAAGTTTTGGTGTCTCCTAGTAGACAGAAGTTAGGTGAAGAGTTGCGAGAAGCCTTTTGCATGACAGAGAAGTATGTGTTGCTCGTTAGTGGTCACGAAAAACTTACGGAAAACAACAAAAGTTTGAAGCGTTTGATTGAAAGCAGACTTCCTTTTTTAAATCCCATTAACATGATCCAAGTGGAGATATTGCGTCGTCTGCGAAGAGATGTGAATAACCCCAAACTTCGTGATGCATTGCTTATCACCATCAATGGTATAGCTGCAGGCATGAGGAACACTGGCTGA___GCAGCTTGTTTAGGGATGCCACTGTTTAATGATTCAAATGAGTATGCATGTATGCATGTGTGCATCCCACGTCGGAATATACCCTATTCAGATTGATATTTGTATAAGGTACAGAAAGCAAGCAGTGTGGTGTGACATTTCTTCAAGCAAGCGCATTGGACTGATACTGGTAGGCTGAGTTTAAGACGGAATGGAAGATTGGTCAATAAAATTTGTGCTGGGCAGAAACTAAAAGAAAAGTGTGTACTTTTCTTTGCTGAAAAGGGAATGAAAAGATAGCGAGTGAACTTTTGTTTGATGGAGCTTAAGCAGCTGGCAATTAAGAAAATTGAGTTCTAATTTTGTTGTGCACTGTCCTGGATATCAGTGCTTTTGTATTATAGGAGTAATATGTTTAGTGCAAGTTTTGAACTTACATGACTACATAATGTTACATGACTATATAATGTTCATATTGGGAAGCAAGAAATGGTTTTTCAAGACAAGATGTACTTCAAATATTGTTTGAGGCTGTTGCATGTTCCTGTCAAGATGCTTCGTGTTAACCACTATATATTAACAACCGCAGCGTATTGTAGATTTGCCGTGTTAACCACTATATATCGTGTTCAATCTCAAAAAAA

Fln Alignment:

Contig20805___AWELYKAQEDVVAACKEFGIKVTLFHXXXXXXXXXXGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLAQTAVRQLEIYTTAVLLATLHPPDPPRSMNWRGVMEKISETSRQYYRSTVYENEQFLEYFREATPEAELGNLNIGSRPTRRKKSSEIGHLRAIPWIFAWTQTRFVLPAWLGVGAGLEAACAKGYKEELQAMYREWPFFQCTIDLIEMVLAKSDLSIAKHYDEVLVSPSRQKLGEELREAFCMTEKYVLLVSGHEKLTENNKSLKRLIESRLPFLNPINMIQVEILRRLRRDVNNPKLRDALLITINGIAAGMRNTG
C0PQ37_______________AWELYKAQEDVVAACKEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSLMGTLRSTEQGEMVQAKFGLAQTAVRQLEIYTTAVLLATLHPPDPPRSANWREVMEKISEISRQYYRSTVYENEQFLEYFREATPEAELGNLNIGSRPTRRKKSSGIGHLRAIPWIFAWTQTRFVLPAWLGVGAGLEAACAKGYKEELQAMYREWPFFQCTIDLIEMVLAKSDISIAKHYDEVLVSPCRQKLGGELREAFCMTEKYVLLVSGHEKLTENNKSLKRLIESRLPFLNPINMIQVEILRRLRRDVNNPKLRDALLITINGIAAGMRNTG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
930		83	16		0.994512
1207	12		87		0.992554
1219		12		87	0.992554
1231	12			87	0.992554
1233	12			87	0.992554
1234	12			87	0.992554
1235		87	12		0.992554
1237		12		87	0.992554
1240	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain