SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20715

Length: 749 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20715

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ	-	-	0.0	63%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	51%
Sma3	Putative retroelement	-	-	5.471e-17	-

Source	Gene names
Sma3	At2g06890; F23H6.1; H0124B04.16; H0201G08.12; H0321H01.8; H0502G05.10; H0502G05.6; H0616A11.2; H0624F09.1; H0807C06-H0308C08.3; H0818H01.18; LOC_Os03g05340; LOC_Os03g05350; LOC_Os03g10000; LOC_Os03g13350; LOC_Os03g23200; LOC_Os03g23220; LOC_Os03g23830; LO

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	carbon utilization	GO:0015976	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Protein of unknown function DUF594	IPR007658	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00860.1	ORF158 DNA/RNA polymerases superfamily protein chrM:235916-236392 FORWARD LENGTH=158	2.0e-39	51%
RefSeq	Arabidopsis thaliana	NP_085542.1	hypothetical protein ArthMp075 (mitochondrion) [Arabidopsis thaliana]	3.0e-39	51%

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
148		75		25	0.996473
182			25	75	0.996473
209	25		75		0.996473
213	25		75		0.996473
222		25	75		0.996473
235			25	75	0.996473
248	25			75	0.996473
272		25		75	0.996473
312		12	87		0.992554
325	75	25			1.0
342		87		12	0.992554
355	87		12		0.992554
400	33		66		1.0
407		25		75	0.996473
411			75	25	0.996473
412		75		25	0.996473
427	75	25			0.996473
429	75			25	0.996473
496	88		11		0.923564
514		88		11	0.923564
516	11		88		0.923564
531		14		85	0.993533
533	83	16			0.994512
534		20		80	0.995493
539	25		75		0.996473
568	25	75			0.996473
589			50	50	1.0
613		50	50		1.0
615			75	25	0.996473
617		25		75	0.996473
630	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain