SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20633

Length: 1291 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20633

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen allergen CJP38 n=1 Tax=Cryptomeria japonica RepID=Q588B8_CRYJA	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Sma3	Beta-1,3-glucanase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	At2g01630; At3g57270; At5g56590; BG2-1; BG2-2; BG2-3; BGL32; BHVG1; F28O9.120; GGL1; GGL4; GLUB1; GLUB2; GLUB3; GN1; GN2; GNS1; GSVIVT00002713001; GSVIVT00015734001; GSVIVT00022221001; GSVIVT00022223001; GSVIVT00025336001; GSVIVT00025340001; GSVIVT0002534

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	proteinaceous extracellular matrix	GO:0005578	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	licheninase activity	GO:0042972	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002336706.1	predicted protein, partial [Populus trichocarpa]	0.0	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTI6

Fln msg:

Fln protein: MAAFKDQSRIFLIGCVAIFCCLILADGDKIGVDYGMDADNLPSADEVVTLMKSNNIGKTRIYQENNVVLQAFANSGIDVIVGVANGELENISSSQESANDWVNEYIVPFYPATNVKYIAVGNEVLITKGDVGYVPYLVPAMNNIQTAIQNANLQNSIKVSTTHRPDVSSGYPPSNGTFVDAVKDTMSQILNFLSQNGGPFMADVYPYFSYIGDTKDISLDYALFKSTSTVVQDGDHSYTNLFDAMVDTLLSAMEASGYPNIPIVITESGWPSAGADAATIENAQTYNNNLIKHVLSNAGTPKRPGVSIDTYVFALFNEDLKQGDETEKHFGLFDPTTKQPVYSVNFSP*

Protein Length: 350

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCTCATTTCCTGTGATAAAA_-_ATGGCAGCCTTTAAAGACCAATCTAGGATCTTCCTGATTGGATGTGTGGCCATCTTCTGTTGTTTAATTCTCGCAGATGGTGATAAAATAGGAGTGGACTATGGCATGGACGCAGACAATCTTCCATCTGCAGACGAGGTGGTAACTTTGATGAAGTCCAACAACATTGGGAAAACGAGAATTTACCAGGAAAACAATGTTGTACTGCAAGCTTTCGCGAATTCTGGTATCGATGTAATAGTGGGTGTCGCTAACGGCGAACTGGAGAACATATCTTCCAGCCAAGAGTCGGCAAACGATTGGGTTAACGAGTACATTGTGCCCTTCTATCCCGCCACCAATGTCAAATACATTGCAGTGGGAAACGAGGTTTTGATAACCAAGGGGGACGTTGGGTACGTACCCTATCTTGTTCCGGCCATGAACAACATTCAAACTGCGATCCAGAACGCTAATCTGCAGAATAGCATCAAGGTCTCTACCACCCACAGGCCGGATGTTAGCAGCGGCTACCCGCCGTCTAACGGAACCTTCGTAGATGCTGTGAAGGACACGATGAGCCAAATACTCAATTTTCTGTCACAGAACGGCGGTCCCTTCATGGCGGATGTCTATCCATACTTCAGCTACATCGGCGACACAAAAGACATTTCTCTGGATTATGCTCTGTTTAAGTCTACGTCTACGGTGGTGCAAGACGGAGATCACAGCTACACCAACCTGTTCGATGCCATGGTTGATACTCTTTTGTCGGCCATGGAAGCCTCGGGGTATCCTAACATCCCGATCGTCATTACCGAAAGTGGATGGCCTTCTGCTGGCGCGGATGCGGCCACCATTGAGAATGCTCAGACCTATAACAATAATCTTATTAAACATGTATTATCGAATGCAGGAACACCAAAGAGGCCAGGAGTGAGCATCGACACATATGTTTTCGCGCTTTTCAACGAGGATTTGAAGCAAGGCGATGAGACAGAGAAACACTTTGGACTATTCGACCCTACTACTAAACAGCCTGTATACTCTGTCAACTTCTCACCATGA___GTTGTGTTGGAATCCACATCACATGTGACCCGAGTCGATGCAGACAAGCCCTTATCTTCATGCACTGCTATATGTAATCTGCAAGTGTATGGTTATTTCTAAAATAATTTGTGAACAATAAAATGCAAGTGTACGGTAATTTCTAAAATAATTTGTGAACAATAAAATGTCAAAGAAGTTGAGTTTAATATCGTTCTGG

Fln Alignment:

Contig20633___MAAFKDQSRIFLIGCVAIFCCLILADGDKIGVDYGMDADNLPSADEVVTLMKSNNIGKTRIYQENNVVLQAFANSGIDVIVGVANGELENISSSQESANDWVNEYIVPFYPATNVKYIAVGNEVLITKGDVGYVPYLVPAMNNIQTAIQNANLQNSIKVSTTHRPDVSSGYPPSNGTFVDAVKDTMSQILNFLSQNGGPFMADVYPYFSYIGDTKDISLDYALFKSTSTVVQDGDHSYTNLFDAMVDTLLSAMEASGYPNIPIVITESGWPSAGADAATIENAQTYNNNLIKHVLSNAGTPKRPGVSIDTYVFALFNEDLKQGDETEKHFGLFDPTTKQPVYSVNFSP
A9NTI6_______________MAASKEQTKIILIGFIAIFCCSIFTDGDKIGVNYGMLGDNLPPADQVVTLINNNNIGKTRIFAANRDALNAFANSGIDVIVGVGNEELEAISSSQDSANGWVNNNIVPFYPATNIKYIAVGNEVLPS---TQYVSYLFPAMTNIQTAVQNANLQNNIKVSTTHVMGVTNGFPPSQGVFGDDVKDTMNSILKFLSDNGAPYMANVYPYFSYTGSGGSITLDYALFKSTSTVVTDNGRSYTNLFDAMVDTVISAMENLGYPNVPIVITESGWPSAGADAATVENAQSYNNNLIQHILSNAGTPKRSGTSIETYIFALFNENTKTGDEIERHFGLFN-ADQSPAYSVNFSP

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
852	25			75	0.996473
853	25	25	50		0.995533
858	25		75		0.996473
864			25	75	0.996473
869			75	25	0.996473
871	25		75		0.996473
873		25	75		0.996473
874	25		75		0.996473
878		75		25	0.996473
899	80			20	0.995493
907	80		20		0.995493
908	80		20		0.995493
910	80			20	0.995493
911	80		20		0.995493
914	80	20			0.995493
918	20			80	0.995493
964	78		21		1.0
981		41		58	1.0
1020		41		58	1.0
1048	20		80		0.999996
1055	11	88			0.923564
1075		11		83	0.999887
1113	91		8		0.999807
1131	19	80			1.0
1171	88		11		0.999937
1220			85	14	0.993533
1221	16	83			0.994512
1222	83	16			0.994512
1223	83	16			0.994512
1226	16		83		0.994512
1227		16		83	0.994512
1230			80	20	0.995493
1233		20		80	0.995493
1235	80			20	0.995493
1239	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain