SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20589

Length: 995 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20589

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen allergen CJP38 n=1 Tax=Cryptomeria japonica RepID=Q588B8_CRYJA	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Sma3	Beta-1,3-glucanase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Licheninase.	EC:3.2.1.73	-	1.455e-14	-

Source	Gene names
Sma3	At2g01630; At3g57260; At3g57270; At5g20390; B1142C05.26; BG2; BG2-1; BG2-2; BG2-3; BGLUC; F28O9.110; F28O9.120; GGL1; GLU; GLUB1; GLUB2; GLUB3; GN1; GN2; GNS1; GSVIVT00002713001; GSVIVT00015734001; GSVIVT00022221001; GSVIVT00022223001; GSVIVT00025336001;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	proteinaceous extracellular matrix	GO:0005578	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	cellulase activity	GO:0008810	Molecular Function	-
Sma3	licheninase activity	GO:0042972	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Aliphatic acid kinase, short-chain	IPR000890	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002336706.1	predicted protein, partial [Populus trichocarpa]	0.0	47%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTI6

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 316 - 344

Fln protein: MAASNEEMKRILIGFIAIFCCSIVTDGDKIGVNYGMNGDNLPPADQVVTLLNGHNIGKMKLFDPDGGALNAFANSGIDVIVGVNNNDLQAISSSQDSANGWVNDNIVPYSGTSIKYIAVGNEVLPSTQYVSYLVPAMNNIQTAIQNANLQNIKVSTPHAFNVIGVSYPPSHGAFSDDVKDTMSSILKFLSDNGAPFMANVYPYLSYAGGTNGIHLDYALFQPTATAVTDGDHSYSNLFDAMVDSIFYAMEALGYSNVPLIVTESGWPSAGADAATTENAQAYNNNLIQHVLSNSGTPKRPGTNIETYIFALFNEDQ

Protein Length: 317

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTCTCATTTCTTGGGAGAAAT_-_ATGGCAGCGTCTAACGAAGAGATGAAGAGAATCCTGATTGGGTTTATTGCCATCTTCTGTTGTTCAATCGTCACTGATGGTGATAAAATAGGAGTGAACTACGGCATGAACGGAGACAATCTGCCGCCTGCAGACCAGGTGGTAACTTTGCTGAACGGCCACAACATCGGGAAAATGAAGCTTTTCGATCCGGACGGTGGTGCATTGAATGCTTTTGCAAATTCTGGGATCGATGTAATCGTGGGAGTCAATAATAACGATTTGCAGGCCATCTCCTCCAGCCAGGACTCAGCAAATGGTTGGGTTAATGACAATATTGTCCCCTATTCCGGCACCAGTATCAAATATATTGCGGTGGGCAACGAGGTTTTGCCTAGCACGCAGTACGTATCGTATCTTGTTCCTGCCATGAACAACATTCAAACCGCGATCCAGAACGCCAATCTGCAGAACATCAAGGTCTCTACCCCCCATGCCTTCAATGTTATAGGCGTCAGTTACCCGCCTTCACATGGAGCATTCAGCGACGATGTGAAGGATACCATGAGCTCTATACTCAAATTTCTTTCAGATAACGGGGCTCCGTTCATGGCCAATGTGTATCCATATTTGAGTTACGCCGGCGGCACCAATGGCATTCATCTGGACTACGCTCTCTTTCAGCCCACGGCTACGGCGGTGACAGACGGAGATCACAGCTACAGCAACTTGTTCGATGCCATGGTGGATTCTATTTTCTACGCAATGGAAGCCTTGGGATATTCCAACGTCCCGCTCATTGTTACTGAAAGCGGATGGCCTTCTGCTGGCGCTGATGCGGCTACAACTGAGAATGCTCAGGCTTATAACAACAATCTCATCCAACATGTTTTATCGAATTCAGGGACACCCAAGAGGCCGGGTACGAACATCGAGACCTATATCTTCGCTCTTTTCAACGAAGACCAG

Fln Alignment:

Contig20589___MAASNEEMKRILIGFIAIFCCSIVTDGDKIGVNYGMNGDNLPPADQVVTLLNGHNIGKMKLFDPDGGALNAFANSGIDVIVGVNNNDLQAISSSQDSANGWVNDNIVP-YSGTSIKYIAVGNEVLPSTQYVSYLVPAMNNIQTAIQNANLQN-IKVSTPHAFNVIGVSYPPSHGAFSDDVKDTMSSILKFLSDNGAPFMANVYPYLSYAGGTNGIHLDYALFQPTATAVTDGDHSYSNLFDAMVDSIFYAMEALGYSNVPLIVTESGWPSAGADAATTENAQAYNNNLIQHVLSNSGTPKRPGTNIETYIFALFNED
A9NTI6_______________MAASKEQTKIILIGFIAIFCCSIFTDGDKIGVNYGMLGDNLPPADQVVTLINNNNIGKTRIFAANRDALNAFANSGIDVIVGVGNEELEAISSSQDSANGWVNNNIVPFYPATNIKYIAVGNEVLPSTQYVSYLFPAMTNIQTAVQNANLQNNIKVSTTHVMGVTN-GFPPSQGVFGDDVKDTMNSILKFLSDNGAPYMANVYPYFSYTGSGGSITLDYALFKSTSTVVTDNGRSYTNLFDAMVDTVISAMENLGYPNVPIVITESGWPSAGADAATVENAQSYNNNLIQHILSNAGTPKRSGTSIETYIFALFNEN

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
99	88		11		0.923564
111			11	88	0.923564
116		88		11	0.923564
121	10	90			0.90298
149		90		10	0.90298
152		90	10		0.90298
156	90	10			0.90298
157	90			10	0.90298
173	70		30		1.0
239	10		90		0.90298
274	12		87		0.992554
275		12	87		0.992554
278		87		12	0.992554
290	14		85		0.993533
298	85		14		0.993533
302		14		85	0.993533
314	44		55		1.0
326		88		11	0.923564
368		83	16		0.994512
370		83	16		0.994512
377		85	14		0.993533
378	28		71		1.0
385	14		85		0.993533
404			83	16	0.994512
434		77		22	0.999999
438		11		88	0.923564
452	11			88	0.923564
540	40		60		1.0
541	40			60	1.0
547	75	25			0.996473
548		75		25	0.996473
551			75	25	0.996473
560			50	50	1.0
572		50	16	33	1.0
577	83	16			0.994512
581		16	83		0.994512
584	33		66		1.0
599		16		83	0.994512
614			50	50	1.0
649	25		75		0.996473
661		50	50		1.0
675	50		50		1.0
682		50		50	1.0
725		40	60		1.0
741	60			40	1.0
748		80		20	0.995493
754	50	50			1.0
757		75		25	0.996473
775	25		75		0.996473
782	75		25		0.996473
789	66	33			0.997452
818	33		66		0.997452
829		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain