SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20582

Length: 288 nt

UniGene Fasta

>sp_v3.0_unigene20582
GCTTTCTCTTAGACGTCTCCTTTCTGCAGATCCGGGAAATTTGCAATTTCTTTCCTCTGTTGTAAATTAGCAATCTTCTTAGATACCAGTTTCCTCTTGTACATTTAGATGCCTATCCTTCTGTTCTGATTGATTGATATATATCTCTACAGACTACTGGCATGGACCCTGTTACACGAAGATATGTATGGGACATCATTGAGCATATGAAGAAGGATCGGGCCATTGTCTTGACAACTCATTCAATGGAAGAAGCTGATATACTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene20582

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC-type transport-like protein [Arabidopsis thaliana]	-	-	2.0e-13	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	ABC transporter family, retinal flippase subfamily	-	-	1.74e-08	-

Source	Gene names
Sma3	ATH1; ATH11; ATH15; At3g47730; At5g61690; At5g61730; CHLREDRAFT_121110; GSVIVT00000113001; K11J9.22; MAC9.4; OJ1198_B10.9; Os08g0398000; OsI_29139; OsJ_27205; PHYPADRAFT_190702; POPTRDRAFT_581361; POPTRDRAFT_823332; PtrATH1; PtrATH2; T23J7.60; VITISV_0333

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G61730.1	ATATH11, ATH11 ABC2 homolog 11 chr5:24803583-24807898 REVERSE LENGTH=940	3.0e-16	70%
RefSeq	Arabidopsis thaliana	NP_200981.1	ABC transporter A family member 9 [Arabidopsis thaliana]	4.0e-16	70%
RefSeq	Populus trichocarpa	XP_002330122.1	ABC transporter family, retinal flippase subfamily [Populus trichocarpa]	9.0e-16	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 245 aas, your sequence is shorter than subject: 95 - 788

Fln protein: FLLDVSFLQIREICNFFPLL*ISNLLRYQFPLVHLDAYPSVLID*YISLQTTGMDPVTRRYVWDIIEHMKKDRAIVLTTHSMEEADILSDSQGHD

Protein Length: 96

Fln nts: GCTTTCTCTTAGACGTCTCCTTTCTGCAGATCCGGGAAATTTGCAATTTCTTTCCTCTGTTGTAAATTAGCAATCTTCTTAGATACCAGTTTCCTCTTGTACATTTAGATGCCTATCCTTCTGTTCTGATTGATTGATATATATCTCTACAGACTACTGGCATGGACCCTGTTACACGAAGATATGTATGGGACATCATTGAGCATATGAAGAAGGATCGGGCCATTGTCTTGACAACTCATTCAATGGAAGAAGCTGATATACTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig20582___YISLQTTGMDPVTRRYVWDIIEHMKKDRAIVLTTHSMEEADILSD
C0PRA1_______________FLDEPTTGMDPVTRRYVWDIIEDAKKGRAIVLTTHSMEEADILSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain