SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20524

Length: 1414 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20524

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aldo/keto reductase family protein [Arabidopsis thaliana] dbj\|BAB11492.1\| aldose reductase-like protein [Arabidopsis thaliana] gb\|AAY78879.1\| aldo/keto reductase family protein [Arabidopsis thaliana] gb\|AED97606.1\| aldo/keto reductase family protein [Arab	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Aldo-keto reductase, putative	-	-	2.168e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aldehyde reductase.	EC:1.1.1.21	-	1.028e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		1.028e-14	%
Sma3	Fructose and mannose metabolism	00051		1.028e-14	%
Sma3	Galactose metabolism	00052		1.028e-14	%
Sma3	Glycerolipid metabolism	00561		1.028e-14	%
Sma3	Pyruvate metabolism	00620		1.028e-14	%
Sma3	Metabolic pathways	01100		1.028e-14	%
Sma3		EC:2.3.1.17-	-	5.439e-21	-

Source	Gene names
Sma3	AKR; AT1G59960; At1g59950; At1g59960; At1g59960/F23H11.27; At2g21260; At2g37760; At2g37770; At2g37790; At3g53880; At5g01670; At5g01670/F7A7_190; At5g62420; CHLREDRAFT_158244; CHR; F23H11.26; F23H11.27; F5K20_180; F7A7_190; GSVIVT00007069001; GSVIVT0001491

Source	GOs	Term	Type	Identity
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	6'-deoxychalcone synthase activity	GO:0033808	Molecular Function	-
Sma3	codeinone reductase (NADPH) activity	GO:0047036	Molecular Function	-
Sma3	aldose-6-phosphate reductase (NADPH) activity	GO:0047641	Molecular Function	-
Sma3	uronate dehydrogenase activity	GO:0050388	Molecular Function	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G62420.1	NAD(P)-linked oxidoreductase superfamily protein chr5:25064835-25066111 FORWARD LENGTH=316	52%
RefSeq	Arabidopsis thaliana	NP_201048.1	aldo/keto reductase family protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002326793.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8S1

Fln msg:

Fln protein: MEMLDRVSQLNSGFKIPLIGLGTAALPQNEDDLKEAVATALKVGYRHFDTASIYGTEPALGEALSGVFQSGVVMRGEVFVTSKLFASDHEDPVSALKTSLKKLQLEYLDLYLIHWPINLRKGASHPIPKEEDFLPLDIKSVWRGLEQCVELGLTRSIGVSNFSCKKIEDLLAYANIPPAVNQVEMHPLWQQKKLRDYCSNVKIHVSAYSPLGSFGTYYGTNAAMENTVIQEIAKSRGKTVAQVLLRWGLEQGVSVLPKSYNKGRIADNYQIFDWSLTKNDHEKISELEQKKIVRRDGLINSTTSPYKTIEDLWDGEI*

Protein Length: 319

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATTGGGCACACTGGGGCCTCAAAGATTCCTGAGAAGCTCGGACTCACAATGTAACTCAGAACCAAAACCTCAATTTTTCATTTTCACTGCTGCTCTTTTACTTTGTTGTGAAT_-_ATGGAGATGCTAGACAGAGTTTCACAACTGAACTCAGGATTCAAAATCCCGTTGATAGGCCTGGGTACGGCTGCATTACCTCAGAACGAGGACGATTTAAAGGAAGCTGTAGCTACAGCTCTCAAGGTAGGTTACAGGCACTTTGACACTGCAAGTATTTATGGCACAGAGCCAGCTTTAGGAGAAGCTCTCAGTGGGGTTTTTCAGAGTGGAGTTGTAATGCGGGGTGAAGTTTTTGTTACCAGTAAACTCTTCGCGAGTGATCATGAAGATCCTGTTTCTGCATTGAAGACAAGTTTAAAGAAGTTGCAGCTTGAATATTTGGACTTGTATCTGATCCACTGGCCTATAAATTTGAGAAAAGGAGCTTCGCATCCAATTCCTAAAGAGGAAGACTTTTTGCCATTAGATATCAAGTCTGTATGGAGGGGATTGGAGCAATGTGTGGAGTTGGGTCTTACCAGATCTATTGGCGTGAGCAATTTCTCATGCAAGAAGATTGAAGATTTGTTGGCATATGCCAACATTCCTCCTGCTGTCAATCAGGTTGAGATGCATCCCCTGTGGCAACAAAAAAAGCTAAGAGATTATTGCAGCAACGTCAAGATTCATGTCAGTGCATATTCTCCTCTAGGATCATTTGGTACCTACTATGGGACCAATGCCGCTATGGAAAATACTGTCATTCAGGAAATTGCCAAAAGTCGCGGAAAGACTGTGGCTCAGGTTTTGTTGAGATGGGGATTGGAACAAGGAGTCAGCGTGCTGCCTAAAAGCTACAACAAGGGTAGAATAGCTGATAATTATCAAATTTTTGACTGGTCATTAACTAAAAATGATCATGAGAAGATTAGCGAACTTGAACAAAAGAAGATTGTGAGGAGAGACGGACTCATTAACTCAACCACCAGCCCTTACAAAACCATTGAAGACTTATGGGATGGAGAAATCTAA___TTAACTCTTGAATGTGCATATCTTTACTTTTTAATTGGGGAGCCTAATGCAGTTGACAGCTTCTCAATAATATTGATACATCTCTTGCTTCCTTCCCTTAACCAATAGTTGAATGGTAGACAAGGGGCACTTACTGTAAAGAGACGAGGTTAAAGCTTTGTGGACATCTTTCCTATCCAAATAAATATTACTTTCAAAGAGCAGACTTCGCTTCCTCTTAGACGGAGACTTGGCTGTTTGCATTTAATTTTGTAAAAGGAACCACTTTTTCAAGATATGTTAAGATAATTCTATGGTATGCCGTGCATAGCATGTTAGAAT

Fln Alignment:

Contig20524___MEMLDRVSQLNSGFKIPLIGLGTAALPQNEDDLKEAVATALKVGYRHFDTASIYGTEPALGEALSGVFQSGVVMRGEVFVTSKLFASDHEDPVSALKTSLKKLQLEYLDLYLIHWPINLRKGASHPIPKEEDFLPLDIKSVWRGLEQCVELGLTRSIGVSNFSCKKIEDLLAYANIPPAVNQVEMHPLWQQKKLRDYCSNVKIHVSAYSPLGSFGTYYGTNAAMENTVIQEIAKSRGKTVAQVLLRWGLEQGVSVLPKSYNKGRIADNYQIFDWSLTKNDHEKISELEQKKIVRRDGLINSTTSPYKTIEDLWDGEI
D5A8S1_______________MEILGGVSQLNSGLQIPLIGFGTAALPQNKDDLSKAVATALKVGYRHFDTASIYGTEAALGEALNGAFQSRVVKRDEVFVTTKLYAGDHEDPVSALKTSLKELQLEYLDLYLIHWPINLKKGSSHPMPREEDFLPLDIKSIWRGLENCVELGLTKSIGVSNFSCKKTEDLLSYANIPPAVNQVEMHPMWQQKKLRDYCTKVNIHVSAHCPLGSFGTYYGSNAVMENTVIKEIAQRRGKTVAQVLLRWGLEQGVSVLPKSYNEGRLAENYQIFDWSLTRDDHEKIGKLEQKRIVRRDGLINPTTSPYRTIEDLWDGEI

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
38		33		66	0.997452
70		14		85	0.993533
71		85		14	0.993533
72	85			14	0.993533
73		85	14		0.993533
74	85		14		0.993533
75	57	14		28	1.0
79	85	14			0.993533
190	33		66		1.0
406		25		75	0.996473
443	66			33	0.997452
1153	25	75			0.996473
1163	75		25		0.996473
1179	25			75	0.996473
1209	75		25		0.996473
1290			16	83	0.994512
1292	80		20		0.995493
1296	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain